PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595028.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 274aa    MW: 30677.6 Da    PI: 8.1017
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595028.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000161131323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ C+ksF++   L  H+r+H
  XP_013595028.1 11 CQVCKKSFPNGRALGGHMRSH 31
                    ********************9 PP
2zf-C2H214.40.00011248270123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC++Cg++F +   L  H ++H
  XP_013595028.1 248 YKCEICGRVFESGQALGGHKKVH 270
                     9***********99999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.6E-9933IPR007087Zinc finger, C2H2
SMARTSM003550.17931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.619936IPR007087Zinc finger, C2H2
SuperFamilySSF576679.05E-51034No hitNo description
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576674.72E-7205270No hitNo description
PfamPF139122.7E-10207230IPR007087Zinc finger, C2H2
SMARTSM003550.19207229IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66207234IPR007087Zinc finger, C2H2
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
PfamPF139124.6E-10247270IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.198248270IPR007087Zinc finger, C2H2
SMARTSM003550.0086248270IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280250270IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MYSLLNETRN CQVCKKSFPN GRALGGHMRS HSRKISASNA KSATGSTVPT LKTPTKLAAN  60
IRPNETVLMR SVHTSEVGRE PDLKREEGGQ QIKGKRKFVV DVDECPSSLT AVEEGALCLV  120
AMSKGQRPAN SQNWNAIDRL LATPNEKEEY TRKSIDIDSA DDDKEDKDKY VASNVRVLTE  180
DIDENEDEDD DDETYLVEKE NQCKKKFTCD ICGKVLHSYQ ALGGHRTSHK TKRLKICDKN  240
GQAMVRHYKC EICGRVFESG QALGGHKKVH YVFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595028.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595028.10.0PREDICTED: zinc finger protein ZAT1
RefseqXP_013694636.10.0zinc finger protein ZAT1-like
TrEMBLA0A0D3DDM30.0A0A0D3DDM3_BRAOL; Uncharacterized protein
STRINGBo7g098740.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.11e-62C2H2-like zinc finger protein