PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013594370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 223aa MW: 24982 Da PI: 6.6368 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.1 | 2.8e-07 | 45 | 93 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + erE+ RRd++++ +eL + l ++ +K +Ka+iL +v+ +k+L XP_013594370.1 45 KIQKAEREKIRRDKLKKHVFELGDALDPN----RPKSDKASILIDTVQILKDL 93 567889********************997....79*************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.50E-5 | 42 | 97 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-10 | 43 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.954 | 43 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-12 | 43 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-5 | 45 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-5 | 49 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MEQLKKLKTS SDDESSTASS SWGHNISFRP EKMVDGKEEP VSSRKIQKAE REKIRRDKLK 60 KHVFELGDAL DPNRPKSDKA SILIDTVQIL KDLMTQVDRL KAEYVTLSQE SRELNQDKSE 120 LREENSSLKS DIEILSAQCQ HRVMVPWIPH YAYPLPVVAI TQASLGPKME RKDDVGLELE 180 LKIHASSSAH DASGKEEKGN STVTASSSNS YYSSSHAVQD CSP |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed consitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013594370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189569 | 3e-48 | AC189569.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009I12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013594370.1 | 1e-163 | PREDICTED: transcription factor bHLH11-like isoform X3 | ||||
Swissprot | Q8W2F2 | 2e-68 | BH011_ARATH; Transcription factor bHLH11 | ||||
TrEMBL | A0A078JS07 | 1e-146 | A0A078JS07_BRANA; BnaC01g40740D protein | ||||
STRING | Bo1g005970.1 | 1e-122 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36060.2 | 1e-66 | bHLH family protein |
Publications ? help Back to Top | |||
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