PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594007.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 276aa    MW: 30898.9 Da    PI: 9.7527
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594007.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00126887221
                    EETTTTEEESSHHHHHHHHH CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                    +C+ Cgk+F ++  L  H+r
  XP_013594007.1 68 PCTECGKTFWSWKALFGHMR 87
                    5******************8 PP
2zf-C2H210.70.0017152174123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k+F ++  L  H  +H
  XP_013594007.1 152 FECGGCKKVFGSHQALGGHRANH 174
                     89***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0116789IPR015880Zinc finger, C2H2-like
PfamPF139124.4E-86791IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8066794IPR007087Zinc finger, C2H2
SuperFamilySSF576676.96E-86889No hitNo description
Gene3DG3DSA:3.30.160.605.6E-46989IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SuperFamilySSF576676.96E-8147174No hitNo description
PfamPF139121.7E-7151175IPR007087Zinc finger, C2H2
SMARTSM003555.1152174IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452152179IPR007087Zinc finger, C2H2
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
SMARTSM0035531212235IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408212240IPR007087Zinc finger, C2H2
PfamPF139121.7E-4212236IPR007087Zinc finger, C2H2
PROSITE patternPS000280214235IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MIHNHLPPTS NAIIPIFPNP NLQLALSPSY HESPRKKRTR TVASTSSPSP KKTKYTKPDP  60
NTPKITRPCT ECGKTFWSWK ALFGHMRCHP ERQWRGINPP PNHRGPTRTL SSSKHLNQRF  120
SLMSEEDYEV ASYLLMLSEA KPLSPSSSGE RFECGGCKKV FGSHQALGGH RANHKNVKGC  180
FAITNVTGDD PVTVTSNQDH HQGKTVTFSE RHKCSNICYR VYSNGQALRG HMRYHCWERE  240
RETVLVGALD LNVPVTTHDL SSSDTSGCSL DLRLGL
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the germ cells following microspore division, increases during development and persists into mature pollen. {ECO:0000269|PubMed:24876252}.
UniprotTISSUE SPECIFICITY: Expressed exclusively in pollen. {ECO:0000269|PubMed:24876252}.
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013594007.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896560.0AC189656.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS015K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594007.10.0PREDICTED: zinc finger protein ZAT3-like
RefseqXP_013670478.10.0zinc finger protein ZAT3-like
SwissprotO654991e-122ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A0D3A1T30.0A0A0D3A1T3_BRAOL; Uncharacterized protein
STRINGBo1g006590.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-116C2H2-like zinc finger protein