PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013593957.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 267aa MW: 31145.3 Da PI: 5.9497 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.7 | 1e-34 | 30 | 122 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k++ei+ed+++++++sw++ g+sfvv+d ++f++ +Lp++Fkhsnf+SFvRQLn+YgF+k++ e+ weF+++ F g+++ll++ XP_013593957.1 30 FLIKTFEIVEDPNTDHIVSWNRGGTSFVVWDLHSFSEFLLPRHFKHSNFSSFVRQLNTYGFRKIEAER---------WEFANEGFLLGQRHLLKS 115 9****************************************************************999.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 ikr++s+ XP_013593957.1 116 IKRRASS 122 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.18E-33 | 26 | 119 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 9.5E-36 | 26 | 119 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.2E-54 | 26 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.4E-29 | 30 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-18 | 30 | 53 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-18 | 68 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 69 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-18 | 81 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MNPFLHREND PPLSPPKPVE GLHEIGPPPF LIKTFEIVED PNTDHIVSWN RGGTSFVVWD 60 LHSFSEFLLP RHFKHSNFSS FVRQLNTYGF RKIEAERWEF ANEGFLLGQR HLLKSIKRRA 120 SSASSIQDPC VQLLKEKQLL SMELASLRQQ QQTARIYIKS MEQRIEGAEK KQKKMMSFLA 180 RALQGPTFLY QLLQERDMRF KEVEVEVEER ERGSSVSELE ALALEMQGYR RQRNVKEEED 240 MVVERELDDG FWEELLSNES LASTSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-24 | 28 | 124 | 18 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 118 | LKSIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013593957.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL049711 | 4e-51 | AL049711.3 Arabidopsis thaliana DNA chromosome 3, BAC clone F4F15. | |||
GenBank | CP002686 | 4e-51 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593957.1 | 0.0 | PREDICTED: heat stress transcription factor A-7a-like | ||||
Swissprot | Q9SV12 | 1e-132 | HFA7A_ARATH; Heat stress transcription factor A-7a | ||||
TrEMBL | A0A0D3DE33 | 0.0 | A0A0D3DE33_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g101330.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1256 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51910.1 | 1e-110 | heat shock transcription factor A7A |
Publications ? help Back to Top | |||
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