PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013593834.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 344aa MW: 38122.6 Da PI: 10.0768

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013593834.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.9	5.7e-30	277	334	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++ +++++ YegeHnh XP_013593834.1 277 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDEASMLIVSYEGEHNHA 334 9***********************988**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	4.4E-15	236	273	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.9E-32	263	334	IPR003657	WRKY domain
PROSITE profile	PS50811	28.954	270	336	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-25	273	334	IPR003657	WRKY domain
SMART	SM00774	9.7E-36	275	335	IPR003657	WRKY domain
Pfam	PF03106	9.3E-26	277	333	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MEEVEAANKA AVESCHGILN LLSQQTNDPK SLLVETREAV IKFKRVTSLL TRGLGGQRKI 60 KKLNNNNNYY KFMSPLLPQH IFLESPICSN NAITGCVPVL APKPLQVIPP AAPSYGEQRP 120 VHPPPMMLNH KMCVDKSFLE LKPPSLRAVD QKPYQYIRNH QQGVYYRSNS GLNLKFDGSG 180 GGGSCYSPSV SNGSRSFVSS LSMDGSVTDY DRNSFHLIGL PQGSDHVSQH SRRTSCSGSL 240 KCGNKSKCHC SKKRKSRVKR SIKVPAISNK IADIPPDEYS WRKYGQKPIK GSPHPRGYYK 300 CSSVRGCPAR KHVERCVDEA SMLIVSYEGE HNHARMLSSQ SAHT

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MEEVEAANKA AVESCHGILN LLSQQTNDPK SLLVETREAV IKFKRVTSLL TRGLGGQRKI  60
KKLNNNNNYY KFMSPLLPQH IFLESPICSN NAITGCVPVL APKPLQVIPP AAPSYGEQRP  120
VHPPPMMLNH KMCVDKSFLE LKPPSLRAVD QKPYQYIRNH QQGVYYRSNS GLNLKFDGSG  180
GGGSCYSPSV SNGSRSFVSS LSMDGSVTDY DRNSFHLIGL PQGSDHVSQH SRRTSCSGSL  240
KCGNKSKCHC SKKRKSRVKR SIKVPAISNK IADIPPDEYS WRKYGQKPIK GSPHPRGYYK  300
CSSVRGCPAR KHVERCVDEA SMLIVSYEGE HNHARMLSSQ SAHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-19	268	333	7	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013593834.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430053	0.0	KF430053.1 Brassica rapa WRKY transcription factor 39 (WRKY39) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013593833.1	0.0	PREDICTED: probable WRKY transcription factor 74
Refseq	XP_013593834.1	0.0	PREDICTED: probable WRKY transcription factor 74
Swissprot	Q93WU6	0.0	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A0D3DCA7	0.0	A0A0D3DCA7_BRAOL; Uncharacterized protein
STRING	Bo7g093090.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	1e-163	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]