PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013593805.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 459aa    MW: 51151.1 Da    PI: 7.5805
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013593805.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.5e-31135192260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++C++kk  ers+ d+k+++i+Y+g+H+h+k
  XP_013593805.1 135 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEAKKLFERSH-DGKITDIIYKGTHDHPK 192
                     8****************************************.***************85 PP
2WRKY105.72.5e-33284342159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+H h+
  XP_013593805.1 284 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAPGCPVRKHVERASHDPKAVITTYEGKHSHD 342
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.709129193IPR003657WRKY domain
SuperFamilySSF1182909.29E-25132193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.6E-27133193IPR003657WRKY domain
SMARTSM007745.0E-34134192IPR003657WRKY domain
PfamPF031061.5E-24135191IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-37269344IPR003657WRKY domain
SuperFamilySSF1182903.4E-29276344IPR003657WRKY domain
PROSITE profilePS5081138.056279344IPR003657WRKY domain
SMARTSM007742.3E-38284343IPR003657WRKY domain
PfamPF031069.5E-26285342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MLCLITFSYL PEPSPTTGSL VKPRPVHVNS SSYTGRTFHQ NTFTEYKSTE FEFRPPASNM  60
VYAELDKHRS EPPVQGHGSS SHSPSSISDA AAASSTNLSR AAPPVQTPPT GSDQDETVQT  120
SQNDSRGSTP PVLADDGYNW RKYGQKHVKG SEFPRSYYKC THPNCEAKKL FERSHDGKIT  180
DIIYKGTHDH PKPQPGRRNS AAQEERVEKG VYNLSQAIEQ TGNNNPEVPL TTEDGGEVKD  240
DLEEEDPFTK RRRLDGSMEI TTPLVKPIRE PRVVVQTLSE VDILDDGYRW RKYGQKVVRG  300
NPNPRSYYKC TAPGCPVRKH VERASHDPKA VITTYEGKHS HDVPTSKSTN HHDIQPRFRP  360
DETTDTISLN LGVGISSGGP DHTSSERNQQ LINQTHPNGV GFRFVHAAPV SYYHVSLNSG  420
IYQYGSRETQ NETRNGDVSS LNHSSYQYSH NIGRIQSGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-37133344877Probable WRKY transcription factor 4
2lex_A3e-37133344877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249253KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013593805.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931550.0KM593155.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY81) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593805.10.0PREDICTED: probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0D3DGA10.0A0A0D3DGA1_BRAOL; Uncharacterized protein
STRINGBo7g111000.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.10.0WRKY family protein