PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013593804.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 523aa    MW: 57841.6 Da    PI: 7.9716
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013593804.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.8e-31199256260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++C++kk  ers+ d+k+++i+Y+g+H+h+k
  XP_013593804.1 199 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEAKKLFERSH-DGKITDIIYKGTHDHPK 256
                     8****************************************.***************85 PP
2WRKY105.43e-33348406159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+H h+
  XP_013593804.1 348 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAPGCPVRKHVERASHDPKAVITTYEGKHSHD 406
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.709193257IPR003657WRKY domain
SuperFamilySSF1182901.12E-24196257IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.2E-27197257IPR003657WRKY domain
SMARTSM007745.0E-34198256IPR003657WRKY domain
PfamPF031061.8E-24199255IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-37333408IPR003657WRKY domain
SuperFamilySSF1182904.05E-29340408IPR003657WRKY domain
PROSITE profilePS5081138.056343408IPR003657WRKY domain
SMARTSM007742.3E-38348407IPR003657WRKY domain
PfamPF031061.1E-25349406IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MNPQADNERK EFQVGCTPTA DSTARHNSGG GGGARYKLMS PAKLPISRCN DITIPPGMSP  60
TSFLESPVFI SNIKPEPSPT TGSLVKPRPV HVNSSSYTGR TFHQNTFTEY KSTEFEFRPP  120
ASNMVYAELD KHRSEPPVQG HGSSSHSPSS ISDAAAASST NLSRAAPPVQ TPPTGSDQDE  180
TVQTSQNDSR GSTPPVLADD GYNWRKYGQK HVKGSEFPRS YYKCTHPNCE AKKLFERSHD  240
GKITDIIYKG THDHPKPQPG RRNSAAQEER VEKGVYNLSQ AIEQTGNNNP EVPLTTEDGG  300
EVKDDLEEED PFTKRRRLDG SMEITTPLVK PIREPRVVVQ TLSEVDILDD GYRWRKYGQK  360
VVRGNPNPRS YYKCTAPGCP VRKHVERASH DPKAVITTYE GKHSHDVPTS KSTNHHDIQP  420
RFRPDETTDT ISLNLGVGIS SGGPDHTSSE RNQQLINQTH PNGVGFRFVH AAPVSYYHVS  480
LNSGIYQYGS RETQNETRNG DVSSLNHSSY QYSHNIGRIQ SGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37197408877Probable WRKY transcription factor 4
2lex_A6e-37197408877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313317KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013593804.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931550.0KM593155.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY81) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593804.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0D3DGA10.0A0A0D3DGA1_BRAOL; Uncharacterized protein
STRINGBo7g111000.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein