PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013593365.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 326aa MW: 35795.5 Da PI: 10.1218

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013593365.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.4	8.1e-30	248	305	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ +Cp++k+ver+ +dp+++++tYe eH+h+ XP_013593365.1 248 DEYSWRKYGQKPIKGSPHPRGYYKCSTFkECPARKHVERALDDPSMLIVTYEWEHDHN 305 9**********************8766**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.0E-17	195	244	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.2E-31	234	305	IPR003657	WRKY domain
PROSITE profile	PS50811	28.885	241	307	IPR003657	WRKY domain
SuperFamily	SSF118290	1.05E-25	244	306	IPR003657	WRKY domain
SMART	SM00774	1.4E-34	246	306	IPR003657	WRKY domain
Pfam	PF03106	7.9E-26	248	304	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:1990841	Molecular Function	promoter-specific chromatin binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MAVDLMRFPK MDDQKAIQEA ASQGLQSMEH LIRVLSTNPP ERNNNVDCSE ITDFTVSKFK 60 TVISLLNRTG HARFRRGPVA SPQKHQSQIA KPEAAPVVVS QPSRPTAKLL PAVVAAPSSQ 120 PSITLDFTKP TVFGSSSKSS EMDFAKENFS VSLNSSYMSS AITGDGSVSK GSSIFLASQP 180 VNSSGKPPLA GHPYRRRCAE HEHSENFSGK ISGSGHGKCH CKKSRKNKVK RTIRVPAISS 240 KIADIPPDEY SWRKYGQKPI KGSPHPRGYY KCSTFKECPA RKHVERALDD PSMLIVTYEW 300 EHDHNPSAMQ QNVSSPGVND FVFNSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-19	234	305	2	72	WRKY transcription factor 1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269\|PubMed:11722756}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269\|PubMed:26433201}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013593365.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:26433201}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013593365.1	0.0	PREDICTED: probable WRKY transcription factor 11 isoform X1
Swissprot	Q9SV15	0.0	WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBL	A0A0D3DH77	0.0	A0A0D3DH77_BRAOL; Uncharacterized protein
STRING	Bo7g115250.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2508	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.1	0.0	WRKY DNA-binding protein 11

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Jiang CH, et al. Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis. J. Exp. Bot., 2016. 67(1): p. 157-74 [PMID:26433201] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]