PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013593099.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 357aa    MW: 39903.5 Da    PI: 6.2425
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013593099.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.4e-07122142526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f++ G Ck Gd C F+Hg
  XP_013593099.1 122 ACPEFRK-GGCKKGDACEFSHG 142
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.36269106IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4117143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.296118144IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-5122142IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.568152176IPR000571Zinc finger, CCCH-type
SMARTSM003560.53152175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MMIGETHRAY PTVQIPPWPL NDDLTAVDIY GSPDGGNSML EALAALQRYL PSNEPDLDTD  60
PELSGPDSAI DTYSCDHFRM YEFKVRRCTR GRSHDWTECP YAHPGEKARR RDPRKYHYSG  120
TACPEFRKGG CKKGDACEFS HGVFECWLHP ARYRTQPCKD GGNCRRRVCF FAHSPDQIRV  180
LPNQSPDRVD SFDGVSPIRR AFQFSISPTS GSPPVSPRDD SESSSLFNRS LGSGSVNDIV  240
ACMRHLQLNK VKSLPSSYNN QVGCYGSGFG SPRGSLLGPG FRSLPNTPSR PEIGYMDIWD  300
NGLEEEPAME RVESGRELRA KMFEKLSKEN CMDRVDPDPY QGSGEAPDVG WVSELVM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013593099.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531430.0AK353143.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-D05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593099.10.0PREDICTED: zinc finger CCCH domain-containing protein 20
SwissprotO821990.0C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A0D3D2I30.0A0A0D3D2I3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EV560.0A0A3P6EV56_BRAOL; Uncharacterized protein
STRINGBo7g005390.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.10.0C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]