PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013593055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 327aa MW: 35495.6 Da PI: 9.7229 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.5 | 3e-38 | 47 | 107 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++ XP_013593055.1 47 PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 107 67899*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.6E-33 | 50 | 105 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.901 | 51 | 105 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 5.0E-27 | 51 | 105 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 53 | 89 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MFGNCDQKKK MPSISSPNTI PLASMQSKNM IVAPSHKQQQ QQQAHQPQPQ LKCPRCDSSN 60 TKFCYYNNYS LSQPRHFCKA CKRYWTRGGT LRNVPVGGSY RKNKRVKRPA TAASTVSKTT 120 SSSPNHQISH FSSMNHHPML YGLSDHVNSC NSLPMIPSRF NDSSKTSSSG LESEFFSSGF 180 SGLGALGLGF PHHMSHDHTA INGGFIDNST ANKPFLLSGL FGSSVSSSSS NLVQHPHKPM 240 NNGGEMMGQS HLQTLASLQD LHVGGNNEDV NKEGKLGQIS GTISGFMSPS SLDPSNYNNI 300 WNNASVVNGE WLDSTNNNVG SSLTSLI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013593055.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY299272 | 0.0 | AY299272.1 Arabidopsis thaliana clone D2 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593055.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.4-like | ||||
Refseq | XP_013692400.1 | 0.0 | dof zinc finger protein DOF1.4-like isoform X1 | ||||
Refseq | XP_013692401.1 | 0.0 | dof zinc finger protein DOF1.4-like isoform X1 | ||||
Swissprot | Q9FZA4 | 1e-145 | DOF14_ARATH; Dof zinc finger protein DOF1.4 | ||||
TrEMBL | A0A078JJD9 | 0.0 | A0A078JJD9_BRANA; BnaCnng51540D protein | ||||
TrEMBL | A0A0D3D696 | 0.0 | A0A0D3D696_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g048220.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4709 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 1e-132 | Dof family protein |