PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013593045.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 430aa MW: 47117 Da PI: 7.7099 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.9 | 4.8e-28 | 160 | 214 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFveaveqL G ekA+P++ilelm+v++Lt+++v+SHLQkYR++ XP_013593045.1 160 KVKVDWTPELHRRFVEAVEQL-GLEKAVPSRILELMGVHCLTRHNVASHLQKYRSH 214 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.356 | 157 | 216 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-27 | 158 | 217 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.81E-18 | 159 | 217 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-26 | 160 | 214 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.8E-8 | 163 | 212 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MLALSPARNS TRDDGESEFR ATSCGFSINP EEDFPEFAVH GDLLDIIDFD DLFGVAGDVL 60 PDLEMDPEIL GGELSDHMNA SSTITTTTSS SEKTKSQGKS NNKKGIPGKG EEVVSKRDHN 120 ETPVAETVVN YDGDSGRKRS HSSSGSTKRN PISNNEGKRK VKVDWTPELH RRFVEAVEQL 180 GLEKAVPSRI LELMGVHCLT RHNVASHLQK YRSHRKHLLA REAEAANWTR KRHIYGLDST 240 GANANGRNRN GWLAPAPTLG YPPPPPAAVA SPPVHHHHLR PLHVWGHPTV DQSVMQHVWP 300 KHLPPPSTAM ATPPFWVSHT PYWPRIHNGT TPFLPTVATR FRTPPVAGIP QALPSHHMVY 360 NYKPDHGFGG PRSLVDLHPS KESVDAAIGD VLTRPWLPLP LGLKPPAVDG VITELHRHGV 420 SDVPPAASCA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-14 | 157 | 212 | 2 | 57 | ARR10-B |
5lxu_A | 8e-15 | 165 | 216 | 6 | 57 | Transcription factor LUX |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bol.4793 | 1e-143 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in rosette and cauline leaves. Expressed at low levels in cotyledons and shoots. {ECO:0000269|PubMed:12220263}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013593045.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593045.1 | 0.0 | PREDICTED: transcription activator GLK1 isoform X2 | ||||
Swissprot | Q9SIV3 | 0.0 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A0D3D284 | 0.0 | A0A0D3D284_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g003410.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 1e-167 | GBF's pro-rich region-interacting factor 1 |