PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592850.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 394aa    MW: 42571.1 Da    PI: 8.1024
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592850.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047181203123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_013592850.1 181 YQCKTCDRTFPSFQALGGHRASH 203
                     9***********99999998887 PP
2zf-C2H2130.00031257279123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_013592850.1 257 HECGICGAEFTSGQALGGHMRRH 279
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.3E-12180205IPR007087Zinc finger, C2H2
SuperFamilySSF576671.51E-7180203No hitNo description
SMARTSM003550.028181203IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471181208IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
SuperFamilySSF576671.51E-7252279No hitNo description
Gene3DG3DSA:3.30.160.608.1E-4255281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.5E-11256281IPR007087Zinc finger, C2H2
SMARTSM003550.047257279IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.951257284IPR007087Zinc finger, C2H2
PROSITE patternPS000280259279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
METAEEAISA AKAQALIIKG KRTKRQRPQS PISFSIVAPM SSQEPDAQEE STSLVAKEKS  60
LNDEINYNNN KNDNNILSNG VTSSSSTSSC FNNATLKAAA DEEDQDMANC LILLAKGHSL  120
PHHNHNHNHQ QPQTRQLMVS YQESGNNNSS NAYRSSSRRF LETSSSNGTT TSGGRAGYYV  180
YQCKTCDRTF PSFQALGGHR ASHKKPKAAP GLHELKKSIY NDAVSLHLND VLTTTPNNSS  240
NHRSLVVYGK ANNNKVHECG ICGAEFTSGQ ALGGHMRRHR GAGVAATATP TATLALPASA  300
ATANTVLSLS PMSFDQMSDG PVYPVQAPVK RARSAVVSLD LDLNLPAPED ENRVNGLSVA  360
PKQEHEQEHG QTQRREEQKS IVLSSAPTLV DCYY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592850.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A0D3AEQ30.0A0A0D3AEQ3_BRAOL; Uncharacterized protein
STRINGBo1g143860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10470.11e-160C2H2 family protein