PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013592816.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YA | ||||||||
Protein Properties | Length: 288aa MW: 31597.2 Da PI: 9.7928 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.3 | 2.2e-32 | 164 | 220 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RR++Rakle+++kl +ksrkpylheSRh hAl+R+RgsgGrF XP_013592816.1 164 NEPIFVNAKQYHAILRRRKHRAKLEAQNKL-IKSRKPYLHESRHLHALKRARGSGGRF 220 59****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.3E-36 | 162 | 223 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.46 | 163 | 223 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.5E-27 | 165 | 220 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.5E-23 | 166 | 188 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 168 | 188 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 4.5E-23 | 197 | 220 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009785 | Biological Process | blue light signaling pathway | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MQVFQSKDSS GSTWENSNIQ RSQSFSLTKN MMMMSTTQLP SSMKHSSLQL QNQDSSSTQS 60 TGESGGGEAA SFGEPIHYGC NSIVANTNLS GYNKSTTTSS IVSQEPVFPP SACGLPSWPL 120 QCAETSHFNG FLAPEYASQP TLSHLEMMGL VTPRVPLPHN IQENEPIFVN AKQYHAILRR 180 RKHRAKLEAQ NKLIKSRKPY LHESRHLHAL KRARGSGGRF LNTKKLQESS NSSLCSSSQM 240 ANGDGEGFSK SSTTPSSGSD RNNMFQNTPF RFSGYPSTHH VSALMSET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-19 | 165 | 225 | 3 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant, except roots. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013592816.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC787683 | 1e-150 | KC787683.1 Brassica napus transcription factor subunit NF-YA5A (NF-YA5A) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592816.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-5 | ||||
Refseq | XP_013592817.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-5 | ||||
Refseq | XP_013643654.1 | 0.0 | nuclear transcription factor Y subunit A-5 | ||||
Refseq | XP_022560681.1 | 0.0 | nuclear transcription factor Y subunit A-5 | ||||
Swissprot | Q9SYH4 | 1e-132 | NFYA5_ARATH; Nuclear transcription factor Y subunit A-5 | ||||
TrEMBL | W6D5Z6 | 0.0 | W6D5Z6_BRANA; Transcription factor subunit NF-YA5A | ||||
STRING | Bra037968.1-P | 1e-164 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11633 | 17 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 1e-110 | nuclear factor Y, subunit A5 |