PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592334.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 569aa    MW: 64741.3 Da    PI: 8.6354
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592334.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.22.6e-2943126186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW++ e+laL+++r+em++++r++ lk+ lWee+s+km+e g++rs+k+Ckek+en+ k++k++keg+ ++++++  t+++f++l 
  XP_013592334.1  43 RWPRPETLALLRIRSEMDKSFRDSTLKALLWEEISRKMMELGYKRSAKKCKEKFENVYKYHKRTKEGRAGKSEGK--TYRFFEELA 126
                     8********************************************************************975544..6*****996 PP
2trihelix108.83.4e-34395480187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev aLi++r+++e +++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qlea
  XP_013592334.1 395 RWPKTEVEALIRIRKNLEANYQENGTKGPLWEEISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PLDSKTCPYFHQLEA 480
                     8*********************************************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.1740102IPR001005SANT/Myb domain
PROSITE profilePS500906.91142100IPR017877Myb-like domain
PfamPF138371.6E-1942127No hitNo description
CDDcd122038.92E-2442107No hitNo description
SMARTSM007179.2E-4392454IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-4394451IPR009057Homeodomain-like
PfamPF138377.0E-24394481No hitNo description
PROSITE profilePS500907.491394452IPR017877Myb-like domain
CDDcd122031.09E-25394459No hitNo description
SuperFamilySSF466894.91E-5395486IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MSGNSSGLLD SSGGGVGGLG EEEKDMKMEE TNEVGGGGGG GSRWPRPETL ALLRIRSEMD  60
KSFRDSTLKA LLWEEISRKM MELGYKRSAK KCKEKFENVY KYHKRTKEGR AGKSEGKTYR  120
FFEELAAFES QPAKSPAATT TTTATTSVIP WISSNNPSTE KTPSPLKHQQ HQVSVKPIAT  180
NPTFLAKQPP PTTPFPFYSN NHATTPDHTG FKPTSNDLLN NVSSLNLFSS STSSSTASDE  240
EEDQEKRSTK KRKYWKGLFT KLTKELMEKQ EKMQKKFLET LENRERERIS REEAWKVQEV  300
ARINKEHETL VHERSNAAAK DAAIISFLHK ISGGQQQQPQ QKPQPQPQQN QKVPQRKQYQ  360
SEQHSITFES KEPMPVPLDA TMKMGNHSLS PSSSRWPKTE VEALIRIRKN LEANYQENGT  420
KGPLWEEISA GMRRLGYNRS AKRCKEKWEN INKYFKKVKE SNKKRPLDSK TCPYFHQLEA  480
LYNERNKSGA LPMLPVMVTP QRQLLLPQET QTEFETDGRD KVGNKEGEEE GESEEEDDYE  540
DEEVEGDNET SEFEIVLNKT SSPNNNLFT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18593KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592334.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592334.10.0PREDICTED: trihelix transcription factor GT-2
SwissprotQ391170.0TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0D3D1930.0A0A0D3D193_BRAOL; Uncharacterized protein
TrEMBLA0A3P6H8B60.0A0A3P6H8B6_BRAOL; Uncharacterized protein
STRINGBo6g120880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.20.0Trihelix family protein