PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013592228.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 356aa MW: 37338.3 Da PI: 7.1815

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013592228.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.9	8.5e-39	43	129	4	92
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas...nsssgkaak 92 k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ ++s + ++ + ++ XP_013592228.1 43 VKKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNASLRGGGGgfaQ------SS 129 5899***************************************************************888422222222222211......11 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.3E-35	47	149	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.489	47	101	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
METRTVEEAS LQLNSTENPS PGGGSVPTTS SNTAALAVVK SAVKKPSKDR HTKVDGRGRR 60 IRMPAVCAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA TTGTGTIPAN FSTLNASLRG 120 GGGGFAQSSK SSSLQMSFHG SGMSLYDDSN GSNGSSSSAV VDHSRKLLNG GVFGFHHPPI 180 MSAERNPYRE DYFKESEVAG GSSQKPGQFQ DQEIGPGMGR GAPTASVVPQ PMWAVAPGST 240 NGGSAFWMLP MSGSGGREQM QQQQQPGHQM WSFNPGSYPV GAGRVVTAAP MGSMMLGGQQ 300 LGLGVAEGNM AAALRGGREG DGLGMTLEQH QHQHHQQHQE PNNQGEASEN GGDDKK

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

METRTVEEAS LQLNSTENPS PGGGSVPTTS SNTAALAVVK SAVKKPSKDR HTKVDGRGRR  60
IRMPAVCAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA TTGTGTIPAN FSTLNASLRG  120
GGGGFAQSSK SSSLQMSFHG SGMSLYDDSN GSNGSSSSAV VDHSRKLLNG GVFGFHHPPI  180
MSAERNPYRE DYFKESEVAG GSSQKPGQFQ DQEIGPGMGR GAPTASVVPQ PMWAVAPGST  240
NGGSAFWMLP MSGSGGREQM QQQQQPGHQM WSFNPGSYPV GAGRVVTAAP MGSMMLGGQQ  300
LGLGVAEGNM AAALRGGREG DGLGMTLEQH QHQHHQQHQE PNNQGEASEN GGDDKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bol.3215	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013592228.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013592228.1	0.0	PREDICTED: transcription factor TCP22-like
Swissprot	Q9C7G4	1e-160	TCP22_ARATH; Transcription factor TCP22
TrEMBL	A0A0D3D006	0.0	A0A0D3D006_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6GYA0	0.0	A0A3P6GYA0_BRAOL; Uncharacterized protein
STRING	Bo6g114530.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7053	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	3e-86	TCP family protein

Publications ? help Back to Top
Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Dong H, et al. Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis. Genes Dev., 2017. 31(2): p. 197-208 [PMID:28167503]