PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013592109.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 271aa MW: 31005.7 Da PI: 7.5358

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013592109.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.3	7.1e-12	23	65	5	46
SHHHHHHHH.HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 5 nksnrqvtf.skRrngilKKAeELSvLCdaevaviifsstgkl 46 n+++ + +f R ++ilKKA ELS+LC+ e++vi + +g+l XP_013592109.1 23 NQTRFKKSFlLLREKTILKKALELSILCENEICVIHYDREGNL 65 4444444431349************************999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0079	12	71	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-12	21	106	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-6	35	65	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.166	35	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MDSLSSSSTS TKMKNNNKLS VRNQTRFKKS FLLLREKTIL KKALELSILC ENEICVIHYD 60 REGNLVNAYP EDQCQVKDIL QRYNRLSDRE KVKKNTNLSQ FYNKKLVDEK RRSLTDAEER 120 KRFTKKVGAF KGSLEDKLQI VKDRVRDLLY SQDHQTEPDQ SPCLDVMSQQ NHNFPGSSSG 180 FFFPNELSDP WMNFSPHDLD QQQSFTNLLM SGDHVSASSD QYLLGPASCA TDASNHESKF 240 SVFLFNHETA TFTQLPNSAS SSFDQGLIGT Y

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013592109.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013591122.1	0.0	PREDICTED: agamous-like MADS-box protein AGL93
Refseq	XP_013592109.1	0.0	PREDICTED: agamous-like MADS-box protein AGL93
TrEMBL	A0A0D3CP91	0.0	A0A0D3CP91_BRAOL; Uncharacterized protein
STRING	Bo6g015480.1	0.0	(Brassica oleracea)
STRING	Bo6g015500.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11759	7	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27580.1	9e-39	AGAMOUS-like 89