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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013591757.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
Trihelix |
| Protein Properties |
Length: 300aa MW: 33076 Da PI: 8.0638 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013591757.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 48.7 | 2e-15 | 73 | 155 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+++ +++Li+a ++ ++ ++g lk+++W ev++ + + ++ ++ +qCk++++ ++k+yk++k+ ++ s++++f++le
XP_013591757.1 73 CWSEEATKVLINAWGDRFSEPGKGTLKQQQWHEVAEIVnesGQCKYAKTDVQCKNRIDTVKKKYKQEKAKNGP------SKWAFFKKLE 155
7*************************************5444455899***********************97......58******98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MEEEDKTQSQ QSPRDALSPA PILPTSNVTV ASATKPPPSS SSQSPLALVV QTPSVNRNGR 60
IGGGGGGGGR DDCWSEEATK VLINAWGDRF SEPGKGTLKQ QQWHEVAEIV NESGQCKYAK 120
TDVQCKNRID TVKKKYKQEK AKNGPSKWAF FKKLESLIGG GGNAPVGARS SGPMRWHFRK 180
RSASETESES ESEPEHSAEN LPPTQPLPKR LKMGESGVGD VAKAILGFTE AYEKAETAKL 240
KLMMELEKER MKFAKEMELQ RMHFLITQVE ITRTNQEEER SKRDGDDDDR NVKNNGDVSS
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Induced by seed imbibition with a peak after 1 hour and then steadily decreases to be barely detectable at day 3. {ECO:0000269|PubMed:19155348}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ973845 | 0.0 | DQ973845.1 Brassica napus clone PBCESTNA20 microsatellite sequence. |
