PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591266.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 228aa    MW: 25943.2 Da    PI: 6.9114
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591266.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY42.31.5e-131171592059
                     S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  20 fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       rsYYrC ++   +Cp+kk+v+r +edp ++ +tY+++H+++
  XP_013591266.1 117 RRRSYYRCNHQkvyKCPAKKQVQRLDEDPYMLRVTYRSSHTCQ 159
                     569*******99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.2E-8102160IPR003657WRKY domain
SuperFamilySSF1182902.22E-12115160IPR003657WRKY domain
PROSITE profilePS5081111.749116161IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-14116159IPR003657WRKY domain
PfamPF031064.6E-13116159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MEEILSKIFN GINLVEELKF NLSAQESPES LSSSLGSIST LFRDANERLG ILLERKNAFV  60
PNQPEPKPVQ VSGLDQMMMQ IEPGLKQDHR VRERVIRLRL GPDDSGPGCA FSTPRPRRRS  120
YYRCNHQKVY KCPAKKQVQR LDEDPYMLRV TYRSSHTCQF STTSSFSSTA TTPVNYGPNV  180
HNMADLMFEN TDSVVPFCEP YLNNDSLVPG AASYEDSWKS TWQSYDMS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591266.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591266.11e-172PREDICTED: WRKY transcription factor 55 isoform X2
SwissprotQ9SHB55e-41WRK55_ARATH; WRKY transcription factor 55
TrEMBLA0A0D3CTF71e-123A0A0D3CTF7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FU371e-123A0A3P6FU37_BRAOL; Uncharacterized protein
STRINGBo6g066790.11e-124(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.23e-26WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]