PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591265.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 272aa    MW: 30937 Da    PI: 8.1837
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591265.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.22.5e-26143203259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dD y WrKYGqKe+ gs++prsYYrC ++   +Cp+kk+v+r +edp ++ +tY+++H+++
  XP_013591265.1 143 DDNYVWRKYGQKEILGSRYPRSYYRCNHQkvyKCPAKKQVQRLDEDPYMLRVTYRSSHTCQ 203
                     8***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-27136203IPR003657WRKY domain
SuperFamilySSF1182901.27E-24140204IPR003657WRKY domain
SMARTSM007741.6E-32142204IPR003657WRKY domain
PROSITE profilePS5081120.748143205IPR003657WRKY domain
PfamPF031062.6E-24143203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEEILSKIFN GINLVEELKF NLSAQESPES LSSSLGSIST LFRDANERLG ILLERKNAFV  60
PNQPEPKPVQ VSGLDQMMMQ IEPGLKQDHR VRERVIRLRL GPDDSGPGCA FSTPRPRRRK  120
KDGAVETVLV ATARMVNMGT PPDDNYVWRK YGQKEILGSR YPRSYYRCNH QKVYKCPAKK  180
QVQRLDEDPY MLRVTYRSSH TCQFSTTSSF SSTATTPVNY GPNVHNMADL MFENTDSVVP  240
FCEPYLNNDS LVPGAASYED SWKSTWQSYD MS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-18143203969OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115119PRRRK
2116121RRRKKD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591265.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591265.10.0PREDICTED: WRKY transcription factor 55 isoform X1
SwissprotQ9SHB51e-72WRK55_ARATH; WRKY transcription factor 55
TrEMBLA0A0D3CU401e-177A0A0D3CU40_BRAOL; Uncharacterized protein
STRINGBo6g071100.11e-178(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.14e-59WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]