PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590870.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 473aa    MW: 54958.2 Da    PI: 4.6542
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590870.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00076444463221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                     kC+ Cg+ F ++  L +H+ 
  XP_013590870.1 444 KCGRCGEKFESRTKLFKHLA 463
                     7*****************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.38E-13199248No hitNo description
SMARTSM004512.3E-5205239IPR003604Zinc finger, U1-type
PfamPF121711.2E-10208233IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003553.2208232IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280210232IPR007087Zinc finger, C2H2
SMARTSM003553.2443467IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411443472IPR007087Zinc finger, C2H2
PROSITE patternPS000280445467IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MSGGTVPNLL PFFSTKVYSG YSDTWKGFYK VYSDVFNSVY LNEVNFARNL GLRMEAPPVM  60
GSLECPYAQV KEFYSYWLGF RTVMDFCWVD EFDVMAEPDG VVRKKMKEEN DKVRKKAKRE  120
YNESVRSLAA FVKKLDKRVV DMMVMKRIEM EVKKVEERER KENMVKERLE RAMNYKEPDW  180
AKGEDGGFSV VEEDDGDGDD DDDDGMVLYC IVCSKNFKTE KQWKNHEQSK KHKEIVAELR  240
VEEAETETVE ELQEKIQEGF NIDNDEAKDK YVEEEVIGEA DETDDEFVMT EEDVKGSSES  300
EDEDDEMRLL KKMVSEQKNK LKNVVSREED EVVVEIERTK QNAGDANIVE LNTDDNVKDE  360
QDSMEYDKRK STGRRRRSKK DKDKNNLGGL IEKSSEADNT QDRNGDMEEF HAETFEESKR  420
VPRSKTSTRG MTSEGTSKKA FYNKCGRCGE KFESRTKLFK HLADTDHATV KSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102115RKKMKEENDKVRKK
2373380RRRRSKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590870.10.0PREDICTED: dnaJ homolog subfamily C member 21-like
RefseqXP_013701216.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-172JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A0D3CWQ00.0A0A0D3CWQ0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6HAN70.0A0A3P6HAN7_BRAOL; Uncharacterized protein
STRINGBo6g087130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-138DNAJ heat shock N-terminal domain-containing protein