PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590687.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 318aa    MW: 35168.3 Da    PI: 8.1044
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590687.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.23.5e-15232256226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ +++tGtC+yGd C+FaHg
  XP_013590687.1 232 KTELCNKWQETGTCPYGDHCQFAHG 256
                     9***********************8 PP
2zf-CCCH21.25e-07269294126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykte Cr  +++ +C+yG rC+F H+
  XP_013590687.1 269 YKTEVCRMVLAGDICPYGHRCHFRHS 294
                     9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-18225263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-11227262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23230258IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-9230257IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-12232256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-12264297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-9264299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272268296IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5268295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MENETAPFTY SGTSAVGIVN SHGEPSLLRD QLYHSNSRSV MQQRQDMVNR EALCYTRLHE  60
ASLEAEVLRL ENTELRSMNL HLKKELDQLI RSSIQNRFGY DRVPLRMLSN LSIGGGNNRG  120
AEDAENQNRA VNRDDVSDES PTSVIASEDL NRSSLPKSIS VRSSGYSKSS QGGGGGGGGA  180
AAAQCGKSRG AVAKPGACGQ QLSTTQRVYV RGGKKEEEEE IEVEVYNQGM TKTELCNKWQ  240
ETGTCPYGDH CQFAHGIKEL RPVIRHPRYK TEVCRMVLAG DICPYGHRCH FRHSLSEQEK  300
LMAADCKPNN KSSFKLVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A9e-23232297570Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590687.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894890.0AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590686.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
RefseqXP_013590687.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
RefseqXP_013700943.10.0zinc finger CCCH domain-containing protein 15-like
RefseqXP_013700944.10.0zinc finger CCCH domain-containing protein 15-like
RefseqXP_022569484.10.0zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F51e-148C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A0D3CYW10.0A0A0D3CYW1_BRAOL; Uncharacterized protein
TrEMBLA0A3N6RET70.0A0A3N6RET7_BRACR; Uncharacterized protein
STRINGBo6g106620.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-143C3H family protein