PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590682.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 263aa    MW: 29609.3 Da    PI: 6.5161
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.67e-20138194259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dD y WrKYGqKe+ gs++pr    C ++   +Cp+kk+v+r +edp ++ +tY+++H+++
  XP_013590682.1 138 DDNYVWRKYGQKEILGSRYPR----CNHQkvyKCPAKKQVQRLDEDPYMLRVTYRSSHTCQ 194
                     8*****************998....55555559**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-20133194IPR003657WRKY domain
SuperFamilySSF1182906.54E-19135195IPR003657WRKY domain
SMARTSM007744.8E-26137195IPR003657WRKY domain
PROSITE profilePS5081115.043138196IPR003657WRKY domain
PfamPF031063.8E-18138194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEEILSIIFN GINQVEELKF NLSAQESPES LSSSLGSIST LFRDANERLG TLLERKNAFV  60
PNQPEPKTVQ VSGLDQMMMQ IEPGLKQDHR VREGVKSIDS GPGCAFSTPR PRRRKKDGAV  120
ETVLVVAARM GNMGTPPDDN YVWRKYGQKE ILGSRYPRCN HQKVYKCPAK KQVQRLDEDP  180
YMLRVTYRSS HTCQFSTTSS FSSTATTPVN YGPNVHNMAD LMFENTDSVV PFCEPYLNND  240
SLVPGAASYE DSWNSTWQSY DMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-14138194969OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110114PRRRK
2111116RRRKKD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590682.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590682.10.0PREDICTED: WRKY transcription factor 55-like isoform X2
SwissprotQ9SHB52e-67WRK55_ARATH; WRKY transcription factor 55
TrEMBLA0A0D3CTF71e-173A0A0D3CTF7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FU371e-173A0A3P6FU37_BRAOL; Uncharacterized protein
STRINGBo6g066790.11e-174(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-54WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]