PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590422.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 342aa    MW: 39118.4 Da    PI: 5.4831
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590422.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.51.1e-201353545
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    +   rq t++kR+ngi+KKA+ELS+LCd++v +++fs+ gk
  XP_013590422.1 13 SINARQATYCKRKNGIMKKAKELSILCDIDVVLLMFSPAGK 53
                    55679*********************************997 PP
2K-box15.47.6e-071451774779
           K-box  47 slkeLqqLeqqLekslkkiRskKnellleqiee 79 
                     s+ +LqqLe+ + +sl +iR +K+++l  q ++
  XP_013590422.1 145 SIDDLQQLENSIRQSLYQIRVHKENVLQHQQQQ 177
                     689************************998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-27160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.511153IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-23293IPR002100Transcription factor, MADS-box
CDDcd002662.41E-23284No hitNo description
PRINTSPR004043.4E-15323IPR002100Transcription factor, MADS-box
PfamPF003198.9E-191554IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGRVKLKIKK LDSINARQAT YCKRKNGIMK KAKELSILCD IDVVLLMFSP AGKPSLCTGE  60
HSIGEVIAKF SQLAPQERAK RKLDNLEALK KTFMKLDHDV NISEFLERSK PTVEVVSEQV  120
RFLQKHLSEI HTRLSYWTEV EKVDSIDDLQ QLENSIRQSL YQIRVHKENV LQHQQQQVMS  180
IECKNELQSD IDLDFGIDIE QQLENFSWVR TDENMKAPLK EEEDPNLQFY HTYKDLTCSA  240
SSSLESYSGL FGIKTPKLES GGIPGTSSDP NVQYSNLSFL NDPKLQQLAE WNLLGSPADY  300
YVSQILEASY RPQFGGNWPS SEMSNYPFTV FDDPLLSKQP TL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590422.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893530.0AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590422.10.0PREDICTED: MADS-box protein CMB1 isoform X3
SwissprotQ1PFA41e-86AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A0D3CZA50.0A0A0D3CZA5_BRAOL; Uncharacterized protein
STRINGBo6g109050.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.11e-173AGAMOUS-like 94
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]