PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590420.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 418aa    MW: 47941.1 Da    PI: 7.2363
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590420.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.11.5e-2090130545
                     SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF   5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                     +   rq t++kR+ngi+KKA+ELS+LCd++v +++fs+ gk
  XP_013590420.1  90 SINARQATYCKRKNGIMKKAKELSILCDIDVVLLMFSPAGK 130
                     55679*********************************997 PP
2K-box15.19.8e-072222544779
           K-box  47 slkeLqqLeqqLekslkkiRskKnellleqiee 79 
                     s+ +LqqLe+ + +sl +iR +K+++l  q ++
  XP_013590420.1 222 SIDDLQQLENSIRQSLYQIRVHKENVLQHQQQQ 254
                     689************************998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.51178130IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-2778137IPR002100Transcription factor, MADS-box
CDDcd002661.13E-2279161No hitNo description
SuperFamilySSF554554.06E-2379170IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-1580100IPR002100Transcription factor, MADS-box
PfamPF003191.2E-1892131IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-15100115IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-15115136IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MRRSIPQFPI FKLSIQTLIS DFGGHTCRLN RKPISSLSFT ILLPLLSFIF FLPHKETVFP  60
FCLSIRLKES LFLSLIRMGR VKLKIKKLDS INARQATYCK RKNGIMKKAK ELSILCDIDV  120
VLLMFSPAGK PSLCTGEHSI GEVIAKFSQL APQERAKRKL DNLEALKKTF MKLDHDVNIS  180
EFLERSKPTV EVVSEQVRFL QKHLSEIHTR LSYWTEVEKV DSIDDLQQLE NSIRQSLYQI  240
RVHKENVLQH QQQQVMSIEC KNELQSDIDL DFGIDIEQQL ENFSWVRTDE NMKAPLKEEE  300
DPNLQFYHTY KDLTCSASSS LESYSGLFGI KTPKLESGGI PGTSSDPNVQ YSNLSFLNDP  360
KLQQLAEWNL LGSPADYYVS QILEASYRPQ FGGNWPSSEM SNYPFTVFDD PLLSKPTL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893530.0AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590420.10.0PREDICTED: developmental protein SEPALLATA 1 isoform X2
SwissprotQ1PFA43e-85AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A0D3CZA50.0A0A0D3CZA5_BRAOL; Uncharacterized protein
STRINGBo6g109050.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.11e-171AGAMOUS-like 94
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]