PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590230.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 335aa    MW: 34643.1 Da    PI: 4.284
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42e-104199563
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                    ++ +r+++NRe+ArrsR RK++ +  L++  ++L + N++    ++  +++++k+++e+
  XP_013590230.1 41 RKRKRLESNRESARRSRMRKREHLVGLTTQLEQLRKDNRKATIAIDVTTEHYDKMEAEN 99
                    5779**************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.6E-1334101IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-738120No hitNo description
PROSITE profilePS502179.77239102IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.71E-94194No hitNo description
PfamPF001703.9E-94199IPR004827Basic-leucine zipper domain
CDDcd147021.32E-174293No hitNo description
PROSITE patternPS0003604459IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MMNKPEMRSC MTCNWSPVLT TSLPNSGSES DLVQRDLINE RKRKRLESNR ESARRSRMRK  60
REHLVGLTTQ LEQLRKDNRK ATIAIDVTTE HYDKMEAENS VMRAQVTELN HRLNSLNQII  120
AFPESYSSAA GEFGMVTGHS AAGGFGMETG HSAAEGFGME AAPSAAGGFG METGQSATGG  180
FGVPSAPSAA GGFEMETGDY AAGGFGMATA PSAAGVFGMA TAPSAAGGFE MDTAAGGFGV  240
ATVPSAAGVF GMENAPSAAA GGFEMETCQG GGVTDYVDDW SSGGGGGFYD DGWSSGGGGG  300
FYDGGEMDPF DLGFYDEPPN MASASAGVGD VLNFW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15361RRSRMRKRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894930.0AC189493.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590230.10.0PREDICTED: glycine-rich cell wall structural protein
TrEMBLA0A0D3D0W00.0A0A0D3D0W0_BRAOL; Uncharacterized protein
STRINGBo6g119550.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2710033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.16e-39basic leucine-zipper 44