PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013589556.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 156aa MW: 18014.6 Da PI: 10.0189 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.8 | 2.5e-12 | 22 | 60 | 13 | 50 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50 + R +++lKKA+ELS LC+++v++i + +g+l ++++ XP_013589556.1 22 YNARAATVLKKAFELSELCGVDVCIIWYDREGNLvKTWP 60 55699************************9998637887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.75E-11 | 21 | 97 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 8.634 | 22 | 55 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-8 | 24 | 55 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MKMNKLLVRK DTIFKKPSSS LYNARAATVL KKAFELSELC GVDVCIIWYD REGNLVKTWP 60 ENEEAKVRAI AERYSMLSEE ERGKKRNNLS GFLNKKMIRD KKESLRKRDN KFFQFSQKFS 120 QKSETEVVFL RSPPASGPTS APTNVEEEED QAAAVW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013589556.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013589556.1 | 1e-111 | PREDICTED: agamous-like MADS-box protein AGL93 | ||||
Swissprot | Q7X9N2 | 6e-25 | AGL53_ARATH; Agamous-like MADS-box protein AGL53 | ||||
TrEMBL | A0A3P6BZS0 | 4e-70 | A0A3P6BZS0_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CIN7 | 4e-70 | M4CIN7_BRARP; Uncharacterized protein | ||||
STRING | Bra004071.1-P | 6e-71 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15639 | 7 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27090.1 | 5e-32 | AGAMOUS-like 54 |
Publications ? help Back to Top | |||
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