PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013589514.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 212aa MW: 24126.5 Da PI: 7.7936 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.9 | 4.8e-22 | 50 | 98 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i+++ +rqvtfskRr+g++KKA ELSvLC+a++ +i fs ++y + XP_013589514.1 50 KEIQEENRRQVTFSKRRTGLFKKAAELSVLCGAQIGIITFSRCERIYAF 98 67999*************************************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.35E-22 | 42 | 111 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.063 | 42 | 102 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.8E-26 | 42 | 101 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-20 | 44 | 64 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.2E-22 | 52 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-20 | 64 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-20 | 79 | 100 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MENGEASLTT CLPFKEQKPM QTPNLAVKQR NGRKQQNPKT TKGRQRIEIK EIQEENRRQV 60 TFSKRRTGLF KKAAELSVLC GAQIGIITFS RCERIYAFGN VNTLIESYLR KTPVMLRSYY 120 GGDVATGVDG DGPMWWERAV ESVPEEEMDE YMKGLNGLRE NLWTRICEMS GDPTAQMNAQ 180 ICPDLMAPVN WKLMDENLTV KNDQGQAGYD GY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013589514.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189575 | 0.0 | AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013589514.1 | 1e-158 | PREDICTED: MADS-box transcription factor 57-like | ||||
Refseq | XP_013690325.1 | 1e-158 | MADS-box transcription factor 57 | ||||
TrEMBL | A0A078IML8 | 1e-157 | A0A078IML8_BRANA; BnaC06g24370D protein | ||||
TrEMBL | A0A0D3CX45 | 1e-157 | A0A0D3CX45_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6QC05 | 1e-157 | A0A3N6QC05_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6FXM6 | 1e-157 | A0A3P6FXM6_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g091550.1 | 1e-158 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4697 | 20 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 1e-70 | M-type_MADS family protein |