PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013589024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 338aa MW: 38502.6 Da PI: 6.6259 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.8e-05 | 170 | 189 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_013589024.1 170 FSCPLCFKTFNRYNNMQMHM 189 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00029 | 254 | 276 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ XP_013589024.1 254 FACRRCGKAFAVKGDWRTHEKNC 276 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-5 | 170 | 189 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.66 | 170 | 197 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 172 | 192 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.99E-6 | 236 | 274 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 240 | 274 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.767 | 254 | 274 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MSNPAYSNLF NNGFDNTNFN CSTSPSYIYN SHNSFYYPNT TNPNYMAPTT STFPNSPPLK 60 EALPLLSLSP IRHQEQQDQH YFMDTDQISS SKFLDYPHDV TVDLHLGLPN YGVGGSYIAP 120 VATTDEQDDD QGVEVTVDSH LHDDDDGDLH RDHYYWIPTP DQILMGPTQF SCPLCFKTFN 180 RYNNMQMHMW GHGSQYRKGP ESLRGTQPTG MLRLPCYCCA PGCKNNIDHP RTKPLKDFRT 240 LQTHYKRKHG SRPFACRRCG KAFAVKGDWR THEKNCGKLW YCSCGSDFKH KRSLKDHVKA 300 FGNGHISCGI DNFGGDHEDY YESASDIAQQ DDCNTNEC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013589024.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ311810 | 0.0 | AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013589024.1 | 0.0 | PREDICTED: zinc finger protein WIP5 | ||||
Refseq | XP_013739635.1 | 0.0 | zinc finger protein WIP5 | ||||
Swissprot | Q8W031 | 0.0 | ZWIP5_ARATH; Zinc finger protein WIP5 | ||||
TrEMBL | A0A078GIX5 | 0.0 | A0A078GIX5_BRANA; BnaC06g04490D protein | ||||
TrEMBL | A0A0D3CPZ1 | 0.0 | A0A0D3CPZ1_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g025920.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51220.1 | 0.0 | WIP domain protein 5 |
Publications ? help Back to Top | |||
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