PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588994.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 413aa    MW: 45900.2 Da    PI: 4.8109
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588994.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025189211123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC  Cgk F++   L  H  +H
  XP_013588994.1 189 YKCDVCGKEFTSYQALGGHKASH 211
                     9***********99999988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.82E-8188264No hitNo description
PROSITE profilePS5015710.658189211IPR007087Zinc finger, C2H2
SMARTSM003550.0059189211IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.1E-4189211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139129.0E-13189212IPR007087Zinc finger, C2H2
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
SMARTSM003550.1242264IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-12242266IPR007087Zinc finger, C2H2
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDLLLFEALM QLPPSTRATV VKVLDHASQN HPTDHDEDSQ KRRCLQREEE EEEECATGTV  60
CVEPRLESSD QSIDDEYSSS RSSKTVTQEE CEECSRDDDD ETTSPSSSET VEQRMILFKP  120
QQEEYEDDVV STELTLGSSS AKPSRQQEEP SCSSPSEDDT SALLLVELCR IRPMQLQTQT  180
QTPQKFDSYK CDVCGKEFTS YQALGGHKAS HRVKLQQPLV DNANAEAGGQ TRPRMAPSGK  240
IHKCSICHVV FPTGQALGGH KRRHYEGVLS GNKRSHDEVI AGDKSSPNHE SVETKTSSGP  300
MQSIVGDHKR SHDEVIAGDK SSPNHESDVT NMSGRKQSFV GDHKRSHDEV IAGDKSSPNH  360
ESDVTKNPGR SFVGLFDLNE PPLQEFDDNN RQEVDKFESA FVANKTLQLI NKI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588994.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588994.10.0PREDICTED: zinc finger protein ZAT1
RefseqXP_013720599.10.0zinc finger protein ZAT1-like
TrEMBLA0A078GTZ40.0A0A078GTZ4_BRANA; BnaC06g02890D protein
STRINGBo6g018710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149691217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.28e-27zinc-finger protein 2