PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588924.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 439aa    MW: 47778.7 Da    PI: 5.3074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588924.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH521.2e-16274321355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++hn+ ErrRR++iN+++  L+el+P +      K +Ka++Le A+eY+ksLq
  XP_013588924.1 274 EKHNISERRRREKINEKMKALQELIPRC-----NKTDKASMLEDAIEYVKSLQ 321
                     58*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.673271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-14274321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-21274348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.25E-18274325No hitNo description
Gene3DG3DSA:4.10.280.106.4E-22274330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MGEDDIVELL WKSGQVVESS QTQRPPVPPP ILRGSGSGGG GGEESAPLPP PPPLHNHQQQ  60
PSDDQNLFIG EDEMASWLLH HPLREEDDFH SHLFYSDVVS AVPSTQPQAS VSLAPPLPPA  120
AGSAIHTPTA AERPMGQVIA ERRAENFLNF SRLRENIHTS GGVEVAAAAP WVPVVVRDLT  180
QVGSSATPSS LAPESCLTPA TVTGGVAQTF AVPRAVETVC EIGGPSSSGV PKTETEPATD  240
ERKRKEREEA AEDTEETGEE ARGSTSRKRS RAAEKHNISE RRRREKINEK MKALQELIPR  300
CNKTDKASML EDAIEYVKSL QMQIQMMSTG MTMMYTPNMP RFMAPSAMGM MGVNRPPFIT  360
FPGTAFPRPP AHMVGLDPSY PAPPYPIPNT QAFDPSRVQQ SDPVQNQPQF PGYLNPYSQF  420
VGLPQMQHPP PPLQNQTTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266283RKRSRAAEKHNISERRRR
2279284ERRRRE
3280285RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588924.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588924.10.0PREDICTED: transcription factor bHLH119-like isoform X1
SwissprotQ9SVU71e-125BH056_ARATH; Putative transcription factor bHLH056
TrEMBLA0A0D3A3N70.0A0A0D3A3N7_BRAOL; Uncharacterized protein
STRINGBo1g017090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.13e-84bHLH family protein