PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013588436.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 248aa MW: 27503.9 Da PI: 9.5596 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.4 | 7.2e-29 | 99 | 158 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C+ a +C+vkkkv+rs ed++v++ tYegeHnh+ XP_013588436.1 99 VKDGYQWRKYGQKVTRNNPSPRAYFKCACApSCSVKKKVQRSVEDQSVLVATYEGEHNHP 158 58**************************999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-27 | 90 | 159 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.74 | 94 | 160 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-24 | 95 | 159 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.3E-32 | 99 | 159 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-23 | 100 | 158 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MLTLMCENYN VLRKQLMEYV NKSNNMTERD QTSPPMKRKS PARDDAVSSA VIGGVSESSS 60 TDQEGQYLCK KKQREETVVK EKVSRVSYKT EASDTTLVVK DGYQWRKYGQ KVTRNNPSPR 120 AYFKCACAPS CSVKKKVQRS VEDQSVLVAT YEGEHNHPMS SQIDSNNGLN RYISLGGHTA 180 PAKGSSSSLA EPVTESKKVT SPSRTDFPEV QKLLVEQMAS SLTKDPNFTA ALAAAVTGRL 240 YQQNQTEK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-20 | 98 | 159 | 16 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 8e-20 | 98 | 159 | 16 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013588436.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU912406 | 0.0 | EU912406.1 Brassica napus WRKY40-1 transcription factor (WRKY40-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013588435.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 isoform X1 | ||||
Refseq | XP_013699066.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 1e-149 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A0D3CVQ8 | 0.0 | A0A0D3CVQ8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6H9T3 | 0.0 | A0A3P6H9T3_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g080740.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-152 | WRKY DNA-binding protein 40 |