PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013588435.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 298aa MW: 32993.9 Da PI: 8.8715 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.9 | 9.9e-29 | 149 | 208 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C+ a +C+vkkkv+rs ed++v++ tYegeHnh+ XP_013588435.1 149 VKDGYQWRKYGQKVTRNNPSPRAYFKCACApSCSVKKKVQRSVEDQSVLVATYEGEHNHP 208 58**************************999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-27 | 140 | 209 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.74 | 144 | 210 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-24 | 145 | 209 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.3E-32 | 149 | 209 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-23 | 150 | 208 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MDRSSSSSFV DTSLDLTIGV TRMRVEEDST TSALVDELNR VSAENKKLSE MLTLMCENYN 60 VLRKQLMEYV NKSNNMTERD QTSPPMKRKS PARDDAVSSA VIGGVSESSS TDQEGQYLCK 120 KKQREETVVK EKVSRVSYKT EASDTTLVVK DGYQWRKYGQ KVTRNNPSPR AYFKCACAPS 180 CSVKKKVQRS VEDQSVLVAT YEGEHNHPMS SQIDSNNGLN RYISLGGHTA PAKGSSSSLA 240 EPVTESKKVT SPSRTDFPEV QKLLVEQMAS SLTKDPNFTA ALAAAVTGRL YQQNQTEK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-19 | 148 | 211 | 16 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-19 | 148 | 211 | 16 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013588435.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU912406 | 0.0 | EU912406.1 Brassica napus WRKY40-1 transcription factor (WRKY40-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013588435.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 isoform X1 | ||||
Refseq | XP_013699066.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 1e-179 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A0D3CVQ8 | 0.0 | A0A0D3CVQ8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6H9T3 | 0.0 | A0A3P6H9T3_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g080740.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2477 | 28 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-180 | WRKY DNA-binding protein 40 |