PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588299.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 318aa    MW: 37540.2 Da    PI: 6.8322
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588299.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.43.8e-2346129184
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdq 84 
                     +W++ +v+++i+  ++++e+  +  ++k++W+ vs++m erg+++sp+qC++k+++lnkrykk++e+ +++t ++++++ +++d+
  XP_013588299.1  46 KWMDTMVKLMITTLSYLDEDDHKH-ARKGKWRTVSEVMDERGYHVSPQQCEDKFNDLNKRYKKLNEMLGRGTcCDVVENPALLDK 129
                     7******************98776.899*******************************************85777777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.4E-2044157No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MRDLGPNVMD NLPVTEYNNG HRWTSQEEDG DGHNKSKNSS PWGRVKWMDT MVKLMITTLS  60
YLDEDDHKHA RKGKWRTVSE VMDERGYHVS PQQCEDKFND LNKRYKKLNE MLGRGTCCDV  120
VENPALLDKI GYLDEKEKDE VRKIMSSKHL FYEEMCSYHN GNRLNLPHDP ALQRSLRIRC  180
SDDDGHGKHQ NEDLVDCEEH NMSQKDCGDR GVSLGGALKR LRRSQNHEDL SHPNHVNEGY  240
VPHLHKQWTE SKSLELEERK LQIQAELMEL ERQRIKWERF SQKRDQKLQI MRMENENMKL  300
ENEKMKLELR GVELGARF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588299.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893390.0AC189339.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB041J04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588299.10.0PREDICTED: uncharacterized protein LOC106296657
TrEMBLA0A0D3CWA50.0A0A0D3CWA5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6H3T80.0A0A3P6H3T8_BRAOL; Uncharacterized protein
STRINGBo6g083700.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.11e-110