PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013588208.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 207aa MW: 23533 Da PI: 9.3671 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.1 | 7.1e-11 | 21 | 54 | 13 | 46 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgkl 46 + R +++lKKA+ELS LC+++v++i f +g+l XP_013588208.1 21 YKARVATVLKKAFELSELCGVNVCIIWFDREGNL 54 456999**********************999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 3.66E-11 | 20 | 97 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 8.998 | 21 | 61 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.1E-8 | 22 | 54 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MKKLSVRKET TLFKKPSSSL YKARVATVLK KAFELSELCG VNVCIIWFDR EGNLVKTCPE 60 NEEAKVRAMA ERYSMLSEQE RNKKSTNLSG FLNKKMMDDK KESLKKKDNK FSGKVSEFMD 120 SLQSRFQTLQ ESLFLVDQQP KEASAVVSTD LSSNHPSTTT TSLSKMKVGT FGIICCYLLY 180 ASLTKTHYCD QSIAWSDQQN GKYSEHD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bol.15051 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013588208.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013588208.1 | 1e-153 | PREDICTED: agamous-like MADS-box protein AGL93 | ||||
Swissprot | Q7X9N2 | 3e-26 | AGL53_ARATH; Agamous-like MADS-box protein AGL53 | ||||
TrEMBL | A0A3P6G550 | 5e-97 | A0A3P6G550_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g014360.1 | 1e-93 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15639 | 7 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27090.1 | 1e-25 | AGAMOUS-like 54 |
Publications ? help Back to Top | |||
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