PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588123.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 290aa    MW: 31986.8 Da    PI: 9.0506
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588123.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.17.5e-3261115358
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     +vrY+eClkNhAas+Gg ++DGCgEfmps geegt +al+CaAC CHRnFHR+e++
  XP_013588123.1  61 TVRYRECLKNHAASVGGSVYDGCGEFMPS-GEEGTLEALRCAACHCHRNFHRKEND 115
                     79**************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-2461113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.4E-2962114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-2963113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.01464113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.7E-31207279IPR009057Homeodomain-like
SuperFamilySSF466898.67E-19209279IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-31219275IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDMRSHEMIE RRREDNGNNG VGNINSIITR EDNGNKTRVS CNSQTLDPHQ SKSPSSFSIS  60
TVRYRECLKN HAASVGGSVY DGCGEFMPSG EEGTLEALRC AACHCHRNFH RKENDGVGSS  120
DGSSHHHHHQ YGGGRRPPPR NMMLNPLMLP PPPSYAPLHH HKYGMSPPGG GGMVTPMSVY  180
GGVRGGGAES SSEDLNMYGQ SSGEHAGGAT PGQTAFSMKR FRTKFTAEQK EKMMEFAEKL  240
GWRMNKQDEE ELRRFCSEIG VKRQVFKVWM HNNKNIARKP PPTSTASGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-242172751674ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588123.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532741e-147AK353274.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588123.10.0PREDICTED: zinc-finger homeodomain protein 5-like
RefseqXP_013588124.10.0PREDICTED: zinc-finger homeodomain protein 5-like
SwissprotQ9FRL51e-112ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLA0A0D3CWI10.0A0A0D3CWI1_BRAOL; Uncharacterized protein
STRINGBo6g086440.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72792543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.11e-102homeobox protein 33