PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013588080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 27587 Da PI: 7.5492 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.9 | 1.3e-11 | 61 | 104 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 e+ErrRR+++ ++ Lr+++P+ + ++Ka+i+e A+ YI +Lq XP_013588080.1 61 EAERRRREKLHGRLMALRSHVPTV-----TNMTKASIVEDAITYIGELQ 104 79*********************8.....69***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.38E-11 | 52 | 108 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-15 | 53 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.653 | 54 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-12 | 60 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-9 | 61 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-13 | 61 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MPFNHKQEKK HFCVKIIGEE GKIMGGGNKF QEPVKINRRR QVRKEKEEDE VNESFKSPNL 60 EAERRRREKL HGRLMALRSH VPTVTNMTKA SIVEDAITYI GELQKIVENL TEKLHEMEET 120 PLEIYEQQTV HTIKPEVEAI DLKMEMKKTG IEENVQFCKI GKRKFWLKIT TEKRPGIFTK 180 FMEVMCLLGF EIIDITLATS NGAIIISSSV QILQGLCDGD SVDPQQTKDF LLEVMRSNP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 67 | ERRRRE |
2 | 63 | 68 | RRRREK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed in floral meristem and early anther primordia. Later detected in archesporial cells. From stage 4 to early stage 5, weakly expressed in precursors of the middle layer, tapetum and meiocytes. Strongly expressed in the tapetum from late anther stage 5 to early stage 6, and at a lower level in meiocytes. {ECO:0000269|PubMed:16831835}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in anthers, and, to a lower extent, in young inflorescences undergoing meiosis and siliques. {ECO:0000269|PubMed:16831835}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in the control of tapetum development. Required for male fertility and pollen differentiation, especially during callose deposition. {ECO:0000269|PubMed:16831835}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013588080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF104530 | 1e-139 | EF104530.1 Brassica rapa clone E30_5 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013588080.1 | 1e-176 | PREDICTED: transcription factor DYT1 | ||||
Refseq | XP_013701375.2 | 1e-176 | transcription factor DYT1-like | ||||
Refseq | XP_013724568.2 | 1e-176 | transcription factor DYT1-like | ||||
Swissprot | O81900 | 1e-108 | DYT1_ARATH; Transcription factor DYT1 | ||||
TrEMBL | A0A0D3A4T9 | 1e-156 | A0A0D3A4T9_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6F8U0 | 1e-156 | A0A3P6F8U0_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g024080.1 | 1e-157 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8358 | 25 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 1e-106 | bHLH family protein |