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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013588058.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
Trihelix |
| Protein Properties |
Length: 329aa MW: 36278.8 Da PI: 8.7722 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013588058.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 53.3 | 7.3e-17 | 75 | 162 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
+W+++ +++Liea e+ ++ ++g lk+++W+ev++++ r+ ++ ++ +qCk++++ ++k+yk++k+ ++ + s++++f++lea
XP_013588058.1 75 CWSEEATKVLIEAWGERFSEPGKGTLKQQQWKEVAEVVnesRQCKYLKTDVQCKNRIDTVKKKYKQEKAKVASG--DGPSKWVFFKKLEA 162
7*************************************988888999*************************98..56668******985 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009733 | Biological Process | response to auxin |
| GO:0009793 | Biological Process | embryo development ending in seed dormancy |
| GO:0010029 | Biological Process | regulation of seed germination |
| GO:0010431 | Biological Process | seed maturation |
| GO:0048831 | Biological Process | regulation of shoot system development |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MEEEDETRSP KSPGDSLSPA PSSPPPILPT SDVTVASATK PPQSPSRNAL ALVVHTPSVV 60
GGSRNGRSGG GRDDCWSEEA TKVLIEAWGE RFSEPGKGTL KQQQWKEVAE VVNESRQCKY 120
LKTDVQCKNR IDTVKKKYKQ EKAKVASGDG PSKWVFFKKL EALIGAGGGK APMGRRQGNK 180
GTVLKRGSDS MKWHFRKRSA SETESESDPE PEASPPDSAE SLPPPPPSQL VSKRLKMDEL 240
GGSGVGDVAK AILGFTEAYE KAETAKLKLM LELEKERMKF VKEMELQRMQ FLKTQMEITQ 300
NHREEERSKP RINDDDDDRN VKNNGDVSS
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 184 | 197 | KRGSDSMKWHFRKR |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Induced by seed imbibition with a peak after 1 hour and then steadily decreases to be barely detectable at day 3. {ECO:0000269|PubMed:19155348}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK352921 | 2e-90 | AK352921.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-P22. |
