PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013587997.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 301aa MW: 33470.6 Da PI: 8.3238 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.7 | 1.2e-28 | 148 | 207 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C+ a +C+vkkkv+rs ed++v++ tYegeHnh+ XP_013587997.1 148 VKDGYQWRKYGQKVTRDNPSPRAYFKCACApSCSVKKKVQRSVEDQSVLVATYEGEHNHP 207 58**************************999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 26.773 | 143 | 209 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-24 | 144 | 209 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-27 | 144 | 209 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-31 | 148 | 208 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-23 | 149 | 207 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MDQYSSSLVD TSLDLTIGIT RMRVEEDSTT SALVDELKRV NAENKKLSEM LTLMCDNYNV 60 LRKQLMEYVN KNNNTAERDD QTSPPKKRKS PARDEAISSA VIGGVSESSS TDQDDQYLCK 120 KQREETVVKE KVSRVYYKTE ASDTTLVVKD GYQWRKYGQK VTRDNPSPRA YFKCACAPSC 180 SVKKKVQRSV EDQSVLVATY EGEHNHPMPS QMDSNNGLNR YVSLGGPVAP AAAANGSCSL 240 AKPVDLTESK KVRSPSRIEF PEVQKLLVEQ MASSLTKDPN FTAALAAAVT GRLYQQNQTE 300 K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-20 | 147 | 210 | 16 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-20 | 147 | 210 | 16 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013587997.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU912406 | 0.0 | EU912406.1 Brassica napus WRKY40-1 transcription factor (WRKY40-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001302712.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Refseq | XP_013587997.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 0.0 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A0D3D1X5 | 0.0 | A0A0D3D1X5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6HG69 | 0.0 | A0A3P6HG69_BRAOL; Uncharacterized protein (Fragment) | ||||
TrEMBL | C4N0X1 | 0.0 | C4N0X1_BRANA; WRKY40-1 transcription factor | ||||
STRING | Bo6g124190.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2477 | 28 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-171 | WRKY DNA-binding protein 40 |