PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013587988.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 660aa MW: 76303.3 Da PI: 7.6264

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013587988.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.1	5.4e-22	72	155	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+evGF+vr+++s ++r++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ l+HnH+l XP_013587988.1 72 NYYNCYANEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRVNDAN-----RVRKETRTGCPAMVRMRQVDSKRWRVLEVTLDHNHSL 155 69**************************************99988.....99*******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-19	72	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-23	262	354	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.606	544	580	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.6E-5	552	576	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	555	582	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence Send to blast
MERSDSGDVD VQASAYLQTD ETHERDEADH DAVFTQNEQR KSEHQEEEFV EGKEFDAPAV 60 GMEFDSYDDA YNYYNCYANE VGFRVRVKNS WFKRRSKEKY GAVLCCSSQG FKRVNDANRV 120 RKETRTGCPA MVRMRQVDSK RWRVLEVTLD HNHSLGYKSV KRTGTKRKCA DSSIKLYKAR 180 VMDVGNSVNT NSTLKKQFQS SSPDVLNLRR GDSSAIYNYF CRMQLTNPNF FYLMDINDEG 240 QLRNVFWADG FSRVSCSYFN DVAFIDNAYI SGKFEIPLVT LVGVNHHGQT TLLGCGLLAG 300 ETVESYHWLL KVWFGLMKCS PQTIVTDRCK PLEAAVSQVF PRSHHRFSVA HIMRKVPEKL 360 GGLVSYDGVR KAFTKAVSET LKVVDFEAAW GFMVHSFGVV DNEWLRSLYE DRARWAPVYL 420 TDTFFAGLAT CRPGESLNPF FERYVHKQTP LKEFLDKYEL ALHRKHREET LAESESLTLK 480 TKCSFETQLS RVYTREMFKK FQVEVEEMYS CFSTTQVHVD GPLVIFLVKE RVQGESNRRE 540 VRDFEVLYNR SVGEVRCICS CFNFYGYLCR HALCVLNFNG VEEIPLRYVL PRWRKDYKRV 600 HAADNGFVDG ADRVQRFDQL YKGALGVVEE GAVSLDRYKV AMQVLEQSLD RVHSVEEKQE

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence Send to blast

MERSDSGDVD VQASAYLQTD ETHERDEADH DAVFTQNEQR KSEHQEEEFV EGKEFDAPAV  60
GMEFDSYDDA YNYYNCYANE VGFRVRVKNS WFKRRSKEKY GAVLCCSSQG FKRVNDANRV  120
RKETRTGCPA MVRMRQVDSK RWRVLEVTLD HNHSLGYKSV KRTGTKRKCA DSSIKLYKAR  180
VMDVGNSVNT NSTLKKQFQS SSPDVLNLRR GDSSAIYNYF CRMQLTNPNF FYLMDINDEG  240
QLRNVFWADG FSRVSCSYFN DVAFIDNAYI SGKFEIPLVT LVGVNHHGQT TLLGCGLLAG  300
ETVESYHWLL KVWFGLMKCS PQTIVTDRCK PLEAAVSQVF PRSHHRFSVA HIMRKVPEKL  360
GGLVSYDGVR KAFTKAVSET LKVVDFEAAW GFMVHSFGVV DNEWLRSLYE DRARWAPVYL  420
TDTFFAGLAT CRPGESLNPF FERYVHKQTP LKEFLDKYEL ALHRKHREET LAESESLTLK  480
TKCSFETQLS RVYTREMFKK FQVEVEEMYS CFSTTQVHVD GPLVIFLVKE RVQGESNRRE  540
VRDFEVLYNR SVGEVRCICS CFNFYGYLCR HALCVLNFNG VEEIPLRYVL PRWRKDYKRV  600
HAADNGFVDG ADRVQRFDQL YKGALGVVEE GAVSLDRYKV AMQVLEQSLD RVHSVEEKQE

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013587988.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013587988.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A0D3CRC1	0.0	A0A0D3CRC1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6G7R6	0.0	A0A3P6G7R6_BRAOL; Uncharacterized protein
STRING	Bo6g039630.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]