PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013587724.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 396aa    MW: 44201.5 Da    PI: 5.8629
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013587724.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.61.2e-32200254155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWtpeLHe+Fv+a++qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+
  XP_013587724.1 200 KQRMRWTPELHEAFVDAINQLGGSERATPKAVLKLINSPGLTIYHVKSHLQKYRT 254
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.862197257IPR017930Myb domain
SuperFamilySSF466898.06E-17198254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-30199256IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-23200254IPR006447Myb domain, plants
PfamPF002495.3E-10202253IPR001005SANT/Myb domain
PfamPF143792.3E-22288334IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MTLTGDFGFP TAMSSFFPLL PTTLDERYHH HKFPNSLWVS SSGQEPMNNP VPCQVFPLAS  60
GGTSSGYCNG TYVSSHERSS SQTRQSVETQ PLPVTNQPQG QRDMSWPEDQ LQGFFDFPPQ  120
AESSRAKSEW PDWANQMISV DDGLEPNWSE LLGDPNVLNQ DSKIPTPSCD IARQEIVVST  180
QHQVDPSSAK SPQASSMTSK QRMRWTPELH EAFVDAINQL GGSERATPKA VLKLINSPGL  240
TIYHVKSHLQ KYRTARYKPE ISVDTEKPPL KTLKTIEDIK SLDLKTSIEI TEALRLQMEV  300
QKKLHEQLEV QRTLQLQIEE QGRYLQMMIE KQQQKMQEKK IGSSSGTSTM PEADTSSAPS  360
PDLSQVSITE RLQSGSGTLD QSGSPSLATK KRVRED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-28200258260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-28200258260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-28200258260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-28200258260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-28200258260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-28200258260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-28200258260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-28200258260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013587724.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587724.10.0PREDICTED: protein PHR1-LIKE 1 isoform X2
SwissprotF4J3P70.0PHLD_ARATH; Myb family transcription factor PHL13
TrEMBLM4FGG80.0M4FGG8_BRARP; Uncharacterized protein
STRINGBra040196.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.11e-180G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]