PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013587622.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 355aa    MW: 38405.7 Da    PI: 7.762
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013587622.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.3e-0984107125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     +kt+lC+ f++ GtC+y  +C+FaH
  XP_013587622.1  84 FKTKLCCKFRA-GTCPYVTNCNFAH 107
                     69*********.************* PP
2zf-CCCH42.79.2e-14229254126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_013587622.1 229 WKTRICNKWEITGYCPFGAKCHFAHG 254
                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-1381116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-781114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.67183110IPR000571Zinc finger, CCCH-type
SMARTSM003560.003983109IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-784107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-6160187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.887160188IPR000571Zinc finger, CCCH-type
SMARTSM003560.6160187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-8161187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-17224258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-10225259IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9228255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178228256IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-11229254IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSHRRDSSGD VVHVIPTNNP PPENWFPNLG DTSVWATEDD YNRVWAVNPD GDNGPPNKKT  60
RGSPSSSSAS AASNRTKAIG KMFFKTKLCC KFRAGTCPYV TNCNFAHTVE ELRRPPPNWQ  120
EIVAAHEEER SGSGTPATVE PREEYQIPSL VSSTDESGRS FKGRHCKKFY TEEGCPYGET  180
CTFLHDEASR NRESVAISLG PGGYGGGGNS NVLVLGGASG IDVLKPSNWK TRICNKWEIT  240
GYCPFGAKCH FAHGAAELHR FGGGLVEGEG KDGGVSSIPD IKQTGPNPKG HSDTMTTLLS  300
PGVVPHHAEA SYHSGVALQR ASSAVTQKPG IRTHQKWKGP AKISRIYGDW IDDIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013587622.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892550.0AC189255.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587622.10.0PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM30.0C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A0D3CDQ10.0A0A0D3CDQ1_BRAOL; Uncharacterized protein
STRINGBo5g048980.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.10.0C3H family protein