PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013587539.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 338aa    MW: 38512.8 Da    PI: 8.106
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013587539.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-05181200120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     + C++C+k+F+r  n++ H+
  XP_013587539.1 181 FACTICSKTFNRYNNMQMHM 200
                     78*****************9 PP
2zf-C2H210.90.0014266288123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cgk    k + ++H +++
  XP_013587539.1 266 FSCGKCGKALAVKGDWRTHEKNC 288
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.8E-9160204No hitNo description
Gene3DG3DSA:3.30.160.601.9E-5173204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.19181203IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388181208IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
SMARTSM00355170229261IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.38E-5251286No hitNo description
Gene3DG3DSA:3.30.160.609.1E-4252286IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355190266286IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSLRNLHEMG LSFESPSFIE WLKAPSSSSS SLLFRIKTKD VVISRSNHQS MLERSLFSYQ  60
TQEPLNTSIQ CLPLLNKLME NESQALDDIK EEKDDDDVVT LQIGLPNYHR GSSVEDDSDT  120
TSDHHQKSPI KREMIDDGVV MMKKRRKMII DEEMNDLDME VCGKRFWIPS PAQIHVGPMQ  180
FACTICSKTF NRYNNMQMHM WGHGSEFRKG ADSLKGTTQP AAILRLPCYC CAEGCKNNIN  240
HPRAKPLKDF RTLQTHYKRK HGSKPFSCGK CGKALAVKGD WRTHEKNCGK LWYCTCGSDF  300
KHKRSLKDHI KSFGNGHSPH PSLSFGGFEE DTECVTTE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142146KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013587539.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587539.10.0PREDICTED: zinc finger protein WIP3
RefseqXP_013712333.10.0zinc finger protein WIP3
SwissprotQ9SGD10.0ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A0D3C8H00.0A0A0D3C8H0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EC830.0A0A3P6EC83_BRAOL; Uncharacterized protein
STRINGBo5g008880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.10.0WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]