PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013587528.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 589aa MW: 64968.5 Da PI: 6.5688 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 434 | 479 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ + K++Ka+ L Av YI++L XP_013587528.1 434 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAVSYINEL 479 799***********************66......***************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 7.7E-49 | 60 | 250 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 2.09E-18 | 430 | 499 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.326 | 430 | 479 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.01E-14 | 433 | 484 | No hit | No description |
Pfam | PF00010 | 3.1E-10 | 434 | 479 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-17 | 434 | 493 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-16 | 436 | 485 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 589 aa Download sequence Send to blast |
MSSNNNNNNN NNNNSSSSVW NEDDKAIVAS LLGKKALDYL LSNSVPNANL LMTVGSDDNL 60 QNKLSDLVET PNSSNFSWNY AIFWQVSRSK SGDLVLCWGD GSCREPKDGE RSEMMRMLSM 120 GREEETHQTL RKRVLQKLHA LFGGLDDEED SCALVLDRVT DTEMFLLASM YFSFPRGQGG 180 PGKCFHSAQP VWLSDLVNSG SDYCVRSFLA KSAGIQTVVL VPTDIGVVEL GSTSCLPHSD 240 ESLSSIRLSF SSPPPPPPPP VRLPVVVANH NDDNSSSKIF GKDLHSSSGF HHQHQQQHRQ 300 FREKLTVRKM DDNRVPKRLL DGNNNRFMFS NPITTNNNTL MSTSTWIPPE APSREDFKFL 360 PLQQSSSSHR LLPPAQIQID FSGASSRPSD NNSDGGGGGA DWADLVGGAD ESGGDNRPRK 420 RGRRPANGRA EALNHVEAER QRREKLNQRF YALRSVVPNI SKMDKASLLG DAVSYINELY 480 AKLKVMEAER EKLGYSSNPL ICLEPPAVNV QTAGEDVAVT VNCALDSHPA SRIFHAFEEA 540 KVEVINSKLE VPQDVVLHTF VIKSEEVTKE KLVSALSREQ SSSRTSSGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-25 | 428 | 493 | 2 | 65 | Transcription factor MYC2 |
5gnj_B | 1e-25 | 428 | 493 | 2 | 65 | Transcription factor MYC2 |
5gnj_E | 1e-25 | 428 | 493 | 2 | 65 | Transcription factor MYC2 |
5gnj_F | 1e-25 | 428 | 493 | 2 | 65 | Transcription factor MYC2 |
5gnj_G | 1e-25 | 428 | 493 | 2 | 65 | Transcription factor MYC2 |
5gnj_I | 1e-25 | 428 | 493 | 2 | 65 | Transcription factor MYC2 |
5gnj_M | 1e-25 | 428 | 493 | 2 | 65 | Transcription factor MYC2 |
5gnj_N | 1e-25 | 428 | 493 | 2 | 65 | Transcription factor MYC2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00100 | PBM | Transfer from AT1G01260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013587528.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013587528.1 | 0.0 | PREDICTED: transcription factor bHLH13 isoform X1 | ||||
Swissprot | Q9LNJ5 | 0.0 | BH013_ARATH; Transcription factor bHLH13 | ||||
TrEMBL | A0A0D3C6Z0 | 0.0 | A0A0D3C6Z0_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g002590.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3758 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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