PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013587509.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 343aa MW: 37359.7 Da PI: 9.0046 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00054 | 36 | 59 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C+k s+ s ++ H H XP_013587509.1 36 FKCHVCHKKLSTASGMVIHVLQvH 59 89*****************87666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50808 | 12.716 | 7 | 66 | IPR003656 | Zinc finger, BED-type |
SuperFamily | SSF57667 | 5.95E-5 | 12 | 61 | No hit | No description |
SMART | SM00355 | 20 | 12 | 35 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 14 | 35 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.084 | 36 | 59 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 38 | 59 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 343 aa Download sequence Send to blast |
MGKKKKRATE KVWCYYCDRE FDDEKILVQH QKAKHFKCHV CHKKLSTASG MVIHVLQVHK 60 ENVTKVPNSK EGRDSIDIEI YGMQGIPPDV LAAHYGEEEE ESPAKVAKIE IPSVPLGAAV 120 PRPYGMVYQP QQVPGAVPAR PMYYPGPPPI RPAGPGWPMP PPRPQQWYPP GSVPPPPHLG 180 YRPPQLFPVH GMGMTMPSSS SPAPPGIQPS SPAMPVSQPL FPVVNSITPS QASPFSAPLP 240 VGASQQPPNN SFPVGGNNSH SYASGPNTSG PSIGPPPVIA NKAPSSQPNE VYLVWDDEAM 300 SMEERRMSLP KYKVHDETSQ MNSINAAIDR RISESRLAGR MAF |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Barely detectable in 3-days-old seedling, and then increases. {ECO:0000269|PubMed:17138694}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root, shoot apex, leaves, stem and flowers. Expressed in expanding leaves, in the vasculature of fully expanded leaves, in the inflorescence, throughout young floral primordia, in the carpels of older flowers and in fertilized ovules. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Sequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013587509.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353116 | 0.0 | AK353116.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-B03. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013587509.1 | 0.0 | PREDICTED: protein SUPPRESSOR OF FRI 4 | ||||
Swissprot | Q9C5G0 | 0.0 | SUF4_ARATH; Protein SUPPRESSOR OF FRI 4 | ||||
TrEMBL | A0A0D3CF26 | 0.0 | A0A0D3CF26_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g065610.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7695 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30970.1 | 1e-175 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|