PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013587292.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 310aa MW: 33285.6 Da PI: 6.3127 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.1 | 7.7e-09 | 163 | 207 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++ + v+Y+k L XP_013587292.1 163 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 207 99***********************55......9**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-14 | 156 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.802 | 158 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-14 | 160 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-6 | 163 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-10 | 164 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MASNNNNNNN NLSEQPPSDD FFEQILGISN FSASSSSGEL SGLPGGLSGG VGPPPPMMLQ 60 LGSGEEGSHH NHMGGGGGGP LGFHNGMFPL GLSLDQGGKG QGFLKPDGSG KRFQDDVVDN 120 RCSSMKPVFH GQPMTQPAPP MPHQQSSIRP RVRARRGQAT DPHSIAERLR RERIAERIRA 180 LQELVPTVNK TDRAAMIDEI VDYVKFLRLQ VKVLSMSRLG GAGAVAPLVT EMPLSSSTED 240 ETQAVWEKWS DDGTERQVAK LMEENVGAAM QLLQSKALCI MPVSLAMAIY HSQPPDTSSS 300 VVKPEMNPPQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 172 | RLRRER |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013587292.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353153 | 0.0 | AK353153.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-H10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013587292.1 | 0.0 | PREDICTED: transcription factor bHLH7 | ||||
Swissprot | Q93Y00 | 1e-164 | BH007_ARATH; Transcription factor bHLH7 | ||||
TrEMBL | A0A0D3C789 | 0.0 | A0A0D3C789_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo5g003580.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1611 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03040.1 | 1e-139 | bHLH family protein |