PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013586952.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 27576.1 Da PI: 5.0768 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.8 | 2e-11 | 70 | 112 | 2 | 48 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 + GVr + +g+W+AeIr p + +++++lg++ t eeA ka+ XP_013586952.1 70 KPVGVRLRQ-SGKWAAEIRNPLT---KTKVWLGTYATLEEAGKAYAD 112 678***999.7*********743...4*****************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.6E-7 | 70 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.356 | 70 | 127 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-10 | 70 | 133 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.12E-15 | 72 | 110 | No hit | No description |
SuperFamily | SSF54171 | 4.18E-12 | 72 | 121 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-16 | 73 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MKKSVRGRKV RIIVSDPYAT DDSSSDEWFE CKPPKVKRIV HEINLPFQLS ESSQYHKSCR 60 RKAASMQLNK PVGVRLRQSG KWAAEIRNPL TKTKVWLGTY ATLEEAGKAY ADKKVEFDAS 120 VASANSQCLR SAASKEKVCL SKDVAASGDL TKEGFDLSQL EIPDLSFLAA EEKSGAKAAG 180 EIDFDCFFKD EDYDHLFDDF SVVDNVNNIS LPSELPDCDF TDVELEHGDM KFAFADQLAH 240 PPLNIACP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013586952.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013586951.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF116 | ||||
Refseq | XP_013586952.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF116 | ||||
Refseq | XP_013697768.1 | 0.0 | ethylene-responsive transcription factor ERF116 | ||||
Refseq | XP_013697769.1 | 0.0 | ethylene-responsive transcription factor ERF116 | ||||
Refseq | XP_013697770.1 | 0.0 | ethylene-responsive transcription factor ERF116 | ||||
Swissprot | Q8GW17 | 4e-64 | EF116_ARATH; Ethylene-responsive transcription factor ERF116 | ||||
TrEMBL | A0A0D3CD68 | 0.0 | A0A0D3CD68_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6RPG1 | 0.0 | A0A3N6RPG1_BRACR; Uncharacterized protein | ||||
STRING | Bo5g043190.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25470.2 | 2e-60 | ERF family protein |