PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013586423.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 364aa    MW: 40550.4 Da    PI: 8.9116
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013586423.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.52.2e-39162238177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cqv+gCe dls+ak+yhr+h+vCe+hsk+p+v+vsg+e+rfCqqCsr h++sefDe+krsCr+rL++hn+rrrk+q
  XP_013586423.1 162 RCQVDGCELDLSSAKDYHRKHRVCETHSKCPKVTVSGVERRFCQQCSRLHAVSEFDEKKRSCRKRLSHHNARRRKSQ 238
                     6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-32154224IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.787160237IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-36161238IPR004333Transcription factor, SBP-box
PfamPF031101.6E-30163236IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDCNMRSPLL WDWENLIISN PSNDKKQLTT TTTTSEWEIE KGEGIESLFP CLDGLQRVSN  60
DSTTSFWHTI SVSKSSQSIS ANSASPIIRQ TKLASENSPG DSCSNIDFVQ VKTSTAVESD  120
LCLKLGKRTY SGRDVSTKLL APCVVTRKKS KSCGQSSMQV PRCQVDGCEL DLSSAKDYHR  180
KHRVCETHSK CPKVTVSGVE RRFCQQCSRL HAVSEFDEKK RSCRKRLSHH NARRRKSQGV  240
FPFNPERVYD QRQHTNVVWG TTCDTKPTQR ESGFTLSFQR GNGSKEEQLF ASSNHSLSAY  300
QTSGGFSAGK NKFQLGAGEC SEVLHQSQDF HRAFSLLSTS SGPLVHPHAQ QPLSLLFSFD  360
GVPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-26154236484squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218235KKRSCRKRLSHHNARRRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013586423.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896490.0AC189649.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS010I09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586419.10.0PREDICTED: squamosa promoter-binding-like protein 11
RefseqXP_013586420.10.0PREDICTED: squamosa promoter-binding-like protein 11
RefseqXP_013586421.10.0PREDICTED: squamosa promoter-binding-like protein 11
RefseqXP_013586422.10.0PREDICTED: squamosa promoter-binding-like protein 11
RefseqXP_013586423.10.0PREDICTED: squamosa promoter-binding-like protein 11
SwissprotQ9FZK01e-165SPL11_ARATH; Squamosa promoter-binding-like protein 11
TrEMBLA0A0D3CE020.0A0A0D3CE02_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EV530.0A0A3P6EV53_BRAOL; Uncharacterized protein
STRINGBo5g051970.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27360.41e-162squamosa promoter-like 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Stief A, et al.
    Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors.
    Plant Cell, 2014. 26(4): p. 1792-1807
    [PMID:24769482]
  3. Liu J, et al.
    The RhoGAP SPIN6 associates with SPL11 and OsRac1 and negatively regulates programmed cell death and innate immunity in rice.
    PLoS Pathog., 2015. 11(2): p. e1004629
    [PMID:25658451]
  4. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]