PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013586420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SBP | ||||||||
Protein Properties | Length: 364aa MW: 40550.4 Da PI: 8.9116 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 125.5 | 2.2e-39 | 162 | 238 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCe dls+ak+yhr+h+vCe+hsk+p+v+vsg+e+rfCqqCsr h++sefDe+krsCr+rL++hn+rrrk+q XP_013586420.1 162 RCQVDGCELDLSSAKDYHRKHRVCETHSKCPKVTVSGVERRFCQQCSRLHAVSEFDEKKRSCRKRLSHHNARRRKSQ 238 6**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.4E-32 | 154 | 224 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.787 | 160 | 237 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.31E-36 | 161 | 238 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-30 | 163 | 236 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MDCNMRSPLL WDWENLIISN PSNDKKQLTT TTTTSEWEIE KGEGIESLFP CLDGLQRVSN 60 DSTTSFWHTI SVSKSSQSIS ANSASPIIRQ TKLASENSPG DSCSNIDFVQ VKTSTAVESD 120 LCLKLGKRTY SGRDVSTKLL APCVVTRKKS KSCGQSSMQV PRCQVDGCEL DLSSAKDYHR 180 KHRVCETHSK CPKVTVSGVE RRFCQQCSRL HAVSEFDEKK RSCRKRLSHH NARRRKSQGV 240 FPFNPERVYD QRQHTNVVWG TTCDTKPTQR ESGFTLSFQR GNGSKEEQLF ASSNHSLSAY 300 QTSGGFSAGK NKFQLGAGEC SEVLHQSQDF HRAFSLLSTS SGPLVHPHAQ QPLSLLFSFD 360 GVPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-26 | 154 | 236 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 218 | 235 | KKRSCRKRLSHHNARRRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013586420.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189649 | 0.0 | AC189649.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS010I09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013586419.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 11 | ||||
Refseq | XP_013586420.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 11 | ||||
Refseq | XP_013586421.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 11 | ||||
Refseq | XP_013586422.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 11 | ||||
Refseq | XP_013586423.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 11 | ||||
Swissprot | Q9FZK0 | 1e-165 | SPL11_ARATH; Squamosa promoter-binding-like protein 11 | ||||
TrEMBL | A0A0D3CE02 | 0.0 | A0A0D3CE02_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EV53 | 0.0 | A0A3P6EV53_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g051970.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27360.4 | 1e-162 | squamosa promoter-like 11 |
Publications ? help Back to Top | |||
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