PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013586130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 259aa MW: 29553.6 Da PI: 8.1041 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.1 | 2.6e-10 | 48 | 85 | 1 | 40 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 r +WT++E++++++a +++ + Wk+I + +g +t q+ XP_013586130.1 48 RENWTEQEHDKFIEALHLFDRD-WKKIEAFVG-SKTVIQV 85 789*****************77.*********.9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.46E-10 | 37 | 86 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-9 | 46 | 86 | IPR006447 | Myb domain, plants |
PROSITE profile | PS51293 | 9.551 | 46 | 90 | IPR017884 | SANT domain |
SMART | SM00717 | 1.6E-6 | 47 | 95 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-5 | 47 | 87 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-8 | 48 | 85 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.70E-7 | 50 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MNMNLPGFST TLPHSKTTMP VSARSHTMSF SEDPTKMIRK PYTITKSREN WTEQEHDKFI 60 EALHLFDRDW KKIEAFVGSK TVIQVQKNGT NEHLPPPRPK RKANHPYPQK ASKSVALTTS 120 NALLEHEYLY TTDPQPLIST PNQGLMRCNV ITPIPVIKEE LGVLENCCST SSSSSIRDQM 180 RTRTVTETDD QRVMPNFDEV YSFIGSVFDP KTTGHVQRLK QMDPINLETV LLLMKNLSVN 240 LSSPEFEEQR RLISSYNGE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013586130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ937211 | 6e-50 | AJ937211.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like3 (lcl3 gene). | |||
GenBank | AY519508 | 6e-50 | AY519508.1 Arabidopsis thaliana MYB transcription factor (At1g01520) mRNA, complete cds. | |||
GenBank | BT029347 | 6e-50 | BT029347.1 Arabidopsis thaliana At1g01520 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013586130.1 | 0.0 | PREDICTED: protein REVEILLE 3 isoform X2 | ||||
Swissprot | Q6R0H0 | 1e-137 | RVE3_ARATH; Protein REVEILLE 3 | ||||
TrEMBL | A0A0D3C6X4 | 0.0 | A0A0D3C6X4_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g002430.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01520.1 | 1e-136 | MYB_related family protein |
Publications ? help Back to Top | |||
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