PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013586129.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 270aa MW: 30926.2 Da PI: 9.06 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.8 | 2.8e-14 | 48 | 92 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky XP_013586129.1 48 RENWTEQEHDKFIEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 92 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.39E-16 | 42 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.766 | 43 | 97 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.2E-17 | 46 | 95 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.5E-7 | 46 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-11 | 47 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-12 | 48 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.26E-9 | 50 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 270 aa Download sequence Send to blast |
MNMNLPGFST TLPHSKTTMP VSARSHTMSF SEDPTKMIRK PYTITKSREN WTEQEHDKFI 60 EALHLFDRDW KKIEAFVGSK TVIQIRSHAQ KYFLKVQKNG TNEHLPPPRP KRKANHPYPQ 120 KASKSVALTT SNALLEHEYL YTTDPQPLIS TPNQGLMRCN VITPIPVIKE ELGVLENCCS 180 TSSSSSIRDQ MRTRTVTETD DQRVMPNFDE VYSFIGSVFD PKTTGHVQRL KQMDPINLET 240 VLLLMKNLSV NLSSPEFEEQ RRLISSYNGE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013586129.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013586129.1 | 0.0 | PREDICTED: protein REVEILLE 3 isoform X1 | ||||
Swissprot | Q6R0H0 | 1e-149 | RVE3_ARATH; Protein REVEILLE 3 | ||||
TrEMBL | A0A0D3C6X4 | 0.0 | A0A0D3C6X4_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g002430.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01520.1 | 1e-148 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|